- Diseases
- Renal coloboma syndrome
Renal coloboma syndrome
Name: |
Renal coloboma syndrome
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Description: |
A genetic condition characterized by optic nerve dysplasia and renal hypodysplasia.
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ORPHAcode: |
1475
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Synonyms: |
Coloboma of optic nerve with renal disease
Papillo-renal syndrome
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XREF(s): | |
Analyte(s): | |
Created: |
13 May 2019 - 01:02
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Changed: |
22 Jun 2023 - 16:14
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Cakut (congenital anomalies of the kidney and urinary tract-1) (69 genes) - IPG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ACE 100.00 1 NM_000789.4 ACTG2 100.00 1 NM_001615.4 AGT 100.00 1 NM_001384479.1 AGTR1 100.00 1 NM_000685.5 ANOS1 100.00 1 NM_000216.4 BMP4 100.00 1 NM_001202.6 BMP7 100.00 1 NM_001719.3 CDC5L 100.00 1 NM_001253.4 CHD1L 100.00 1 NM_004284.6 CHD7 100.00 1 NM_017780.4 DSTYK 100.00 1 NM_015375.3 EYA1 100.00 1 NM_000503.6 FGF20 100.00 1 NM_019851.3 FRAS1 100.00 1 NM_025074.7 FREM1 100.00 1 NM_001379081.2 FREM2 100.00 1 NM_207361.6 GATA3 100.00 1 NM_001002295.2 GLI3 100.00 1 NM_000168.6 GREB1L 100.00 1 NM_001142966.3 GRIP1 100.00 1 NM_001366722.1 HNF1B 100.00 1 NM_000458.4 ITGA8 100.00 1 NM_003638.3 NOTCH2 99.00 1 NM_024408.4 NPHP3 100.00 1 NM_153240.5 PAX2 100.00 1 NM_000278.5 PBX1 100.00 1 NM_002585.4 REN 100.00 1 NM_000537.4 RET 100.00 1 NM_020975.6 ROBO2 100.00 1 NM_001395656.1 RPGRIP1L 96.00 1 NM_015272.5 SALL1 100.00 1 NM_002968.3 SALL4 100.00 1 NM_020436.5 SIX1 100.00 1 NM_005982.4 SIX2 100.00 1 NM_016932.5 SIX5 100.00 1 NM_175875.5 SOX17 100.00 1 NM_022454.4 TBX18 100.00 1 NM_001080508.3 UMOD 100.00 1 NM_003361.4 UPK3A 100.00 1 NM_006953.4 WNT4 100.00 1 NM_030761.5 AGTR2 100.00 1 NM_000686.5 AGXT 100.00 1 NM_000030.3 BNC2 100.00 1 NM_017637.6 CCNQ 100.00 1 NM_152274.5 CEP55 100.00 1 NM_018131.5 CHRM3 100.00 1 NM_001375978.1 CHRNA3 100.00 1 NM_000743.5 CTU2 100.00 1 NM_001012759.3 FOXC1 100.00 1 NM_001453.3 GPC3 100.00 1 NM_004484.4 HOXA13 100.00 1 NM_000522.5 HPSE2 100.00 1 NM_021828.5 JAG1 100.00 1 NM_000214.3 KIF14 100.00 1 NM_014875.3 LIFR 100.00 1 NM_001127671.2 LRIG2 100.00 1 NM_014813.3 LRP4 100.00 1 NM_002334.4 NADSYN1 100.00 1 NM_018161.5 ROBO1 100.00 1 NM_002941.4 SDCCAG8 100.00 1 NM_006642.5 SLIT2 100.00 1 NM_004787.4 STRA6 100.00 1 NM_022369.4 TBC1D1 100.00 1 NM_001396959.1 TFAP2A 100.00 1 NM_001372066.1 TMEM260 100.00 1 NM_017799.4 TRAP1 100.00 1 NM_016292.3 WFS1 100.00 1 NM_006005.3 ZIC3 100.00 1 NM_003413.4 ZMYM2 100.00 1 NM_197968.4 -
Ciliopathy, polycystic kidney and liver diseases, ADTKD, nephronophtisis, Bardet-Biedl syndromes and kidney cancers (146 genes) - IPG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ADAMTS9 100.00 1 NM_182920.2 ALG8 100.00 1 NM_024079.5 ANKS6 100.00 1 NM_173551.5 ARL6 100.00 1 NM_001278293.3 BBIP1 100.00 1 NM_001195305.3 BBS1 100.00 1 NM_024649.5 BBS10 100.00 1 NM_024685.4 BBS12 100.00 1 NM_152618.3 BBS2 100.00 1 NM_031885.5 BBS4 100.00 1 NM_033028.5 BBS5 100.00 1 NM_152384.3 BBS7 100.00 1 NM_176824.3 BBS9 100.00 1 NM_198428.3 CDC73 100.00 1 NM_024529.5 CEP164 100.00 1 NM_014956.5 CEP290 100.00 1 NM_025114.4 CEP83 100.00 1 NM_016122.3 COL4A1 100.00 1 NM_001845.6 COL4A3 100.00 1 NM_000091.5 COL4A4 100.00 1 NM_000092.5 COL4A5 100.00 1 NM_033380.3 DCDC2 100.00 1 NM_016356.5 DNAJB11 100.00 1 NM_016306.6 DZIP1L 100.00 1 NM_173543.3 EYA1 100.00 1 NM_000503.6 FAN1 100.00 1 NM_014967.5 FH 100.00 1 NM_000143.4 FLCN 100.00 1 NM_144997.7 GANAB 100.00 1 NM_198334.3 GATA3 100.00 1 NM_001002295.2 GATM 100.00 1 NM_001482.3 GLIS2 100.00 1 NM_032575.3 HNF1B 100.00 1 NM_000458.4 IFT172 100.00 1 NM_015662.3 IFT27 100.00 1 NM_001177701.3 INVS 100.00 1 NM_014425.5 IQCB1 100.00 1 NM_001023570.4 LRP5 100.00 1 NM_002335.4 LRP6 100.00 1 NM_002336.3 LZTFL1 100.00 1 NM_020347.4 MAPKBP1 100.00 1 NM_014994.3 MET 100.00 1 NM_000245.4 MKKS 100.00 1 NM_170784.3 MKS1 100.00 1 NM_017777.4 NEK8 100.00 1 NM_178170.3 NOTCH2 99.00 1 NM_024408.4 NPHP1 100.00 1 NM_001128178.3 NPHP3 100.00 1 NM_153240.5 NPHP4 100.00 1 NM_015102.5 OFD1 100.00 1 NM_003611.3 PAX2 100.00 1 NM_000278.5 PKD1 100.00 1 NM_001009944.3 PKD2 100.00 1 NM_000297.4 PKHD1 100.00 1 NM_138694.4 PMM2 0.00 1 NM_000303.2 une seule position PRKCSH 100.00 1 NM_001289104.2 PTEN 100.00 1 NM_000314.8 REN 100.00 1 NM_000537.4 RPGRIP1L 96.00 1 NM_015272.5 SDCCAG8 100.00 1 NM_006642.5 SDHB 100.00 1 NM_003000.3 SDHD 100.00 1 NM_003002.4 SEC61A1 100.00 1 NM_013336.4 SEC63 100.00 1 NM_007214.5 TMEM67 100.00 1 NM_153704.6 TRIM32 100.00 1 NM_012210.4 TSC1 100.00 1 NM_000368.5 TSC2 100.00 1 NM_000548.5 TTC21B 100.00 1 NM_024753.5 TTC8 100.00 1 NM_144596.4 UMOD 100.00 1 NM_003361.4 VHL 100.00 1 NM_000551.4 WDPCP 100.00 1 NM_015910.7 WDR19 100.00 1 NM_025132.4 XPNPEP3 100.00 1 NM_022098.4 ZNF423 100.00 1 NM_001379286.1 AHI1 100.00 1 NM_001134831.2 ALG5 100.00 1 NM_013338.5 ALG9 100.00 1 NM_024740.2 ARL13B 100.00 1 NM_001174150.2 ARL3 100.00 1 NM_004311.4 ARMC9 100.00 1 NM_001352754.2 ATXN10 100.00 1 NM_013236.4 B9D1 100.00 1 NM_015681.6 B9D2 100.00 1 NM_030578.4 BAP1 100.00 1 NM_004656.4 C2CD3 100.00 1 NM_001286577.2 CC2D2A 100.00 1 NM_001378615.1 CCDC28B 100.00 1 NM_024296.5 CEP104 100.00 1 NM_014704.4 CEP120 100.00 1 NM_001375405.1 CEP41 100.00 1 NM_018718.3 CFAP418 100.00 1 NM_177965.4 CPLANE1 100.00 1 NM_001384732.1 CSPP1 100.00 1 NM_001382391.1 CYP24A1 100.00 1 NM_000782.5 DLG5 100.00 1 NM_004747.4 DYNC2H1 100.00 1 NM_001377.3 DYNC2I1 100.00 1 NM_018051.5 DYNC2I2 100.00 1 NM_052844.4 DYNC2LI1 100.00 1 NM_016008.4 DYNLT2B 100.00 1 NM_152773.5 EVC 100.00 1 NM_153717.3 EVC2 100.00 1 NM_147127.5 FAM149B1 100.00 1 NM_173348.2 HNF1A 100.00 1 NM_000545.8 HYLS1 100.00 1 NM_001134793.2 IFT122 100.00 1 NM_052989.3 IFT140 100.00 1 NM_014714.4 IFT43 100.00 1 NM_001102564.3 IFT52 100.00 1 NM_016004.5 IFT74 100.00 1 NM_025103.4 IFT80 100.00 1 NM_020800.3 IFT81 100.00 1 NM_014055.4 INPP5E 100.00 1 NM_019892.6 INTU 100.00 1 NM_015693.4 JAG1 100.00 1 NM_000214.3 KATNIP 100.00 1 NM_015202.5 KIAA0586 100.00 1 NM_001329943.3 KIAA0753 100.00 1 NM_014804.3 KIF14 100.00 1 NM_014875.3 KIF7 100.00 1 NM_198525.3 NEK1 100.00 1 NM_001199397.3 PARN 100.00 1 NM_002582.4 PDE6D 100.00 1 NM_002601.4 PIBF1 100.00 1 NM_006346.4 POC1B 100.00 1 NM_172240.3 RNF139 100.00 1 NM_007218.4 SDHA 100.00 1 NM_004168.4 SDHC 100.00 1 NM_003001.5 SEC61B 100.00 1 NM_006808.3 SLC41A1 100.00 1 NM_173854.6 SREBF1 100.00 1 NM_004176.5 SUFU 100.00 1 NM_016169.4 TCTN1 100.00 1 NM_001082538.3 TCTN2 100.00 1 NM_024809.5 TCTN3 100.00 1 NM_015631.6 TFAP2A 100.00 1 NM_001372066.1 TMEM107 100.00 1 NM_183065.4 TMEM138 100.00 1 NM_016464.5 TMEM216 100.00 1 NM_001173990.3 TMEM218 100.00 1 NM_001258244.2 TMEM231 100.00 1 NM_001077418.3 TMEM237 100.00 1 NM_001044385.3 TOGARAM1 100.00 1 NM_001308120.2 TRAF3IP1 100.00 1 NM_015650.4 TXNDC15 100.00 1 NM_024715.4 WDR35 100.00 1 NM_020779.4 -
Nephrotic syndrome, FSGS, Alport syndrome (76 genes) - IPG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ACTN4 100.00 1 NM_004924.6 AMN 100.00 1 NM_030943.4 ANLN 100.00 1 NM_018685.5 APOA1 100.00 1 NM_000039.3 APOL1 100.00 1 NM_003661.4 ARHGAP24 100.00 1 NM_001025616.3 ARHGDIA 100.00 1 NM_004309.6 AVIL 100.00 1 NM_006576.4 B2M 100.00 1 NM_004048.4 C3 100.00 1 NM_000064.4 CD151 100.00 1 NM_004357.5 CD2AP 100.00 1 NM_012120.3 CLCN5 100.00 1 NM_001127898.4 COL4A3 100.00 1 NM_000091.5 COL4A4 100.00 1 NM_000092.5 COL4A5 100.00 1 NM_033380.3 COL4A6 100.00 1 NM_033641.4 COQ2 100.00 1 NM_001358921.2 COQ6 100.00 1 NM_182476.3 COQ8A 100.00 1 NM_020247.5 COQ8B 100.00 1 NM_024876.4 CRB2 100.00 1 NM_173689.7 CUBN 100.00 1 NM_001081.4 DGKE 100.00 1 NM_003647.3 EMP2 100.00 1 NM_001424.6 FGA 100.00 1 NM_021871.4 FN1 100.00 1 NM_212482.4 G6PC1 100.00 1 NM_000151.4 GLA 100.00 1 NM_000169.3 GSN 100.00 1 NM_198252.3 INF2 100.00 1 NM_022489.4 KANK2 100.00 1 NM_001136191.3 LAMB2 100.00 1 NM_002292.4 LMX1B 100.00 1 NM_001174147.2 LRP2 100.00 1 NM_004525.3 LYZ 100.00 1 NM_000239.3 MAGI2 100.00 1 NM_012301.4 MYH9 100.00 1 NM_002473.6 MYO1E 100.00 1 NM_004998.4 NPHS1 100.00 1 NM_004646.4 NPHS2 100.00 1 NM_014625.4 NUP107 100.00 1 NM_020401.4 NUP133 100.00 1 NM_018230.3 NUP160 100.00 1 NM_015231.3 NUP205 100.00 1 NM_015135.3 NUP85 100.00 1 NM_024844.5 NUP93 100.00 1 NM_014669.5 OCRL 100.00 1 NM_000276.4 PAX2 100.00 1 NM_000278.5 PDSS2 100.00 1 NM_020381.4 PLCE1 100.00 1 NM_016341.4 PMM2 0.00 1 NM_000303.2 / only position Chr16(GRCh38):g.8797616 87976 PTPRO 100.00 1 NM_030667.3 SGPL1 100.00 1 NM_003901.4 SLC35A1 100.00 1 NM_006416.5 TBC1D8B 100.00 1 NM_017752.3 TRPC6 100.00 1 NM_004621.6 TTC21B 100.00 1 NM_024753.5 TTR 100.00 1 NM_000371.4 UMOD 100.00 1 NM_003361.4 WDR73 100.00 1 NM_032856.5 WT1 100.00 1 NM_024426.6 GON7 100.00 1 NM_032490.5 ITGA3 100.00 1 NM_002204.4 KIRREL1 100.00 1 NM_018240.7 LAGE3 100.00 1 NM_006014.5 LAMA5 100.00 1 NM_005560.6 NOS1AP 100.00 1 NM_014697.3 OSGEP 100.00 1 NM_017807.4 PODXL 94.00 1 NM_001018111.3 SARS2 100.00 1 NM_017827.4 SMARCAL1 100.00 1 NM_014140.4 TP53RK 100.00 1 NM_033550.4 TPRKB 100.00 1 NM_016058.5 WDR4 100.00 1 NM_018669.6 XPO5 100.00 1 NM_020750.3 YRDC 100.00 1 NM_024640.4