- Analytes
- SDHAF2
SDHAF2
Name: |
succinate dehydrogenase complex assembly factor 2
|
Symbol: |
SDHAF2
|
Version of Orphanet: |
2023-06-22 14:14:43
|
Synonyms: |
FLJ20487
SDH5
|
XREF(s): | |
Created: |
13 May 2019 - 01:01
|
Changed: |
22 Jun 2023 - 16:14
|
- Familial cancer predisposition (gene panel)
- Kidney cancer (Renal cell carcinoma and transitional cell carcinoma (TCC) renal pelvis) (gene panel)
- Kidney cancer (renal cell carcinoma) (gene panel)
- Leukodystrophy (gene panel)
- Neuroendocrine tumor (NET) (gene panel)
- Onco-endocrine pathologies (gene panel)
- Paraganglioma and pheochromocytoma (gene panel)
- Paraganglioma-pheochromocytoma (gene panel)
- Pediatric oncopredisposition (gene panel)
- Pheochromocytoma - paraganglioma syndrome (gene panel)
-
Hereditary cancer predisposition - UGent
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ABRAXAS1 100.00 0 ACD 100.00 0 AIP 100.00 0 AMER1 100.00 0 APC 100.00 0 ATM 100.00 0 AXIN2 100.00 0 BAP1 100.00 0 BARD1 100.00 0 BLM 100.00 0 BMPR1A 100.00 0 BRCA1 100.00 0 BRCA2 100.00 0 BRIP1 100.00 0 BUB1B 100.00 0 BUB3 100.00 0 CDH1 100.00 0 CDK12 100.00 0 CDK4 100.00 0 CDKN1B 100.00 0 CDKN2A 100.00 0 CHEK1 100.00 0 CHEK2 100.00 0 CTNNA1 100.00 0 CTNNB1 100.00 0 DICER1 100.00 0 EDN3 100.00 0 EDNRB 100.00 0 EPCAM 100.00 0 ERCC4 100.00 0 FANCA 100.00 0 FANCB 100.00 0 FANCC 100.00 0 FANCD2 100.00 0 FANCE 100.00 0 FANCF 100.00 0 FANCG 100.00 0 FANCI 100.00 0 FANCL 100.00 0 FANCM 100.00 0 FH 100.00 0 FLCN 100.00 0 GDNF 100.00 0 GREM1 100.00 0 HNF1B 100.00 0 HOXB13 100.00 0 MAD2L2 100.00 0 MAX 100.00 0 MEN1 100.00 0 MET 100.00 0 MITF 100.00 0 MLH1 100.00 0 MRE11 100.00 0 MSH2 100.00 0 MSH3 100.00 0 MSH6 100.00 0 MUTYH 100.00 0 NBN 100.00 0 NRG3 100.00 0 NRTN 100.00 0 NTHL1 100.00 0 PALB2 100.00 0 PALLD 100.00 0 PBRM1 100.00 0 PMS2 100.00 0 POLD1 100.00 0 POLE 100.00 0 POT1 100.00 0 PPP2R2A 100.00 0 PTEN 100.00 0 RABL3 100.00 0 RAD50 100.00 0 RAD51 100.00 0 RAD51B 100.00 0 RAD51C 100.00 0 RAD51D 100.00 0 RAD54L 100.00 0 RECQL 100.00 0 RET 100.00 0 RFWD3 100.00 0 RNF43 100.00 0 SDHA 100.00 0 SDHAF2 100.00 0 SDHB 100.00 0 SDHC 100.00 0 SDHD 100.00 0 SEMA3C 100.00 0 SEMA3D 100.00 0 SLX4 100.00 0 SMAD4 100.00 0 SMARCA4 100.00 0 SOX10 100.00 0 SPINK1 100.00 0 STK11 100.00 0 SUCLG2 100.00 0 TERF2IP 100.00 0 TERT 100.00 0 TMEM127 100.00 0 TP53 100.00 0 TSC1 100.00 0 TSC2 100.00 0 UBE2T 100.00 0 VHL 100.00 0 WT1 100.00 0 XRCC2 100.00 0 MBD4 100.00 0 NRG1 100.00 0 -
Kidney cancer (Renal Cell Carcinoma (RCC)) (14 genes) - KUL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments BAP1 100.00 1 FH 100.00 1 FLCN 100.00 1 MET 100.00 1 SDHB 100.00 1 SDHD 100.00 1 SDHC 100.00 1 SDHA 100.00 1 SDHAF2 100.00 1 VHL 100.00 1 MLH1 100.00 1 MSH2 100.00 1 MSH6 100.00 1 PMS2 100.00 1 -
Kidney cancer (Transitional Cell Carcinoma (TCC)) (14 genes) - KUL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments BAP1 100.00 1 FH 100.00 1 FLCN 100.00 1 MET 100.00 1 SDHB 100.00 1 SDHD 100.00 1 SDHC 100.00 1 SDHA 100.00 1 SDHAF2 100.00 1 VHL 100.00 1 MLH1 100.00 1 MSH2 100.00 1 MSH6 100.00 1 PMS2 100.00 1 -
Leukodystrophy - UGent
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments AARS2 99.98 1 ABAT 99.98 1 ABCD1 99.98 1 ACBD5 99.97 1 ACER3 99.76 1 ACOX1 99.98 1 ACP5 100.00 1 ACTL6B 99.90 1 ADAR 99.84 1 ADGRG1 99.90 1 ADSL 99.93 1 AGA 99.92 1 AIFM1 99.92 1 AIMP1 99.97 1 AIMP2 99.99 1 ALDH3A2 99.95 1 ALDH5A1 96.19 1 APP 99.92 1 ARSA 99.99 1 ASAH1 99.90 1 ASPA 99.98 1 ATAD3A 99.62 1 ATP7A 99.87 1 ATP7B 100.00 1 AUH 99.95 1 B3GALNT2 92.79 1 BCAP31 99.95 1 BCS1L 99.99 1 BOLA3 99.22 1 BTD 100.00 1 CBS 17.79 1 CIC 98.32 1 CLCN2 100.00 1 CLN3 99.92 1 CLN5 100.00 1 CLN6 100.00 1 CLN8 100.00 1 CNP 99.98 1 CNTNAP1 99.98 1 COA8 99.94 1 COL4A1 99.99 1 COL4A2 99.98 1 COX10 99.99 1 COX15 100.00 1 CYP21A2 99.91 1 CSF1R 99.92 1 CTC1 100.00 1 CTSA 99.98 1 CTSD 100.00 1 CTSF 99.96 1 CYP27A1 100.00 1 DAG1 100.00 1 DARS1 98.85 1 DARS2 98.31 1 DCAF17 99.84 1 DDHD2 99.97 1 DEGS1 99.99 1 DGUOK 99.93 1 DLAT 99.65 1 DLD 99.89 1 DMXL2 99.86 1 DNAJC5 99.99 1 EARS2 99.96 1 ECHS1 100.00 1 EIF2AK1 99.90 1 EIF2AK2 99.70 1 EIF2B1 99.98 1 EIF2B2 99.90 1 EIF2B3 97.26 1 EIF2B4 99.96 1 EIF2B5 99.98 1 EPRS1 99.53 1 ERCC2 99.98 1 ERCC3 99.90 1 ERCC6 99.60 1 ERCC8 99.79 1 FA2H 99.98 1 HYCC1 99.81 1 FAR1 99.82 1 FARS2 100.00 1 FASTKD2 99.93 1 FBXL4 100.00 1 FDX2 99.99 1 CFH 99.97 1 FIG4 99.83 1 FKTN 99.94 1 FLVCR2 100.00 1 FOLR1 100.00 1 FUCA1 98.72 1 GALC 99.92 1 GALT 100.00 1 GAN 99.98 1 GBE1 99.73 1 GFAP 99.99 1 GFM1 99.95 1 GFM2 99.87 1 GJA1 100.00 1 GJB1 100.00 1 GJC2 100.00 1 GLA 99.90 1 GLB1 100.00 1 GM2A 100.00 1 GNAS 100.00 1 GPHN 99.94 1 GRN 100.00 1 GTF2H5 100.00 1 HEPACAM 100.00 1 HEXA 99.99 1 HEXB 99.91 1 HIKESHI 99.78 1 HLCS 99.97 1 HMGCL 99.31 1 HSD17B4 99.71 1 HSPD1 83.42 1 HTRA1 100.00 1 IBA57 100.00 1 IFIH1 99.84 1 IKBKG 57.34 1 ISCA2 100.00 1 IVD 100.00 1 JAM3 100.00 1 KARS1 99.98 1 L2HGDH 99.92 1 LAMA2 99.95 1 LARGE1 100.00 1 LARS2 99.96 1 LIPT1 99.89 1 LIPT2 99.99 1 LMNB1 99.73 1 LYRM7 99.98 1 MAN2B1 99.99 1 MANBA 99.81 1 MARS2 100.00 1 MCOLN1 100.00 1 MFSD8 99.70 1 MLC1 99.99 1 MMUT 99.68 1 MOCS1 99.95 1 MOCS2 99.96 1 MPLKIP 99.99 1 MPV17 99.98 1 MRPS34 100.00 1 MTFMT 99.98 1 MTHFR 99.97 1 MTO1 90.25 1 NAXD 99.99 1 NAXE 99.99 1 NDUFA2 99.95 1 NDUFA9 100.00 1 NDUFAF1 100.00 1 NDUFAF3 100.00 1 NDUFAF4 99.95 1 NDUFAF6 99.86 1 NDUFS1 99.79 1 NDUFS2 99.66 1 NDUFS4 99.99 1 NDUFS7 99.99 1 NDUFS8 100.00 1 NDUFV1 99.99 1 NEU1 99.98 1 NKX6-2 100.00 1 NOTCH3 99.99 1 NPC1 99.99 1 NPC2 100.00 1 NTNG2 99.98 1 NUBPL 99.62 1 OCLN 82.91 1 OCRL 99.89 1 PAH 99.96 1 PARS2 99.99 1 PCCA 99.90 1 PCCB 99.97 1 PDGFB 99.99 1 PDGFRB 99.99 1 PDHA1 99.04 1 PDHB 99.94 1 PDHX 99.64 1 PDP1 100.00 1 PEX1 98.80 1 PEX10 100.00 1 PEX11B 99.62 1 PEX12 100.00 1 PEX13 99.36 1 PEX14 100.00 1 PEX16 99.94 1 PEX19 99.25 1 PEX2 100.00 1 PEX26 100.00 1 PEX3 99.85 1 PEX5 99.89 1 PEX6 99.99 1 PEX7 99.72 1 PLEKHG2 99.99 1 PLP1 99.98 1 PLPBP 99.99 1 PMPCB 99.94 1 PNPT1 99.56 1 POLG 100.00 1 POLR1C 100.00 1 POLR3A 99.97 1 POLR3B 99.94 1 POLR3K 100.00 1 POMGNT1 99.69 1 POMT1 99.96 1 POMT2 99.98 1 PPT1 97.48 1 PRF1 100.00 1 PSAP 99.94 1 PSAT1 99.98 1 PSPH 99.09 1 PYCR2 99.95 1 QDPR 99.92 1 RARS1 99.76 1 RNASEH2A 99.95 1 RNASEH2B 99.94 1 RNASEH2C 99.99 1 RNASET2 99.99 1 SAMHD1 99.98 1 SCP2 94.94 1 SDHA 99.98 1 SDHAF1 99.99 1 SDHAF2 99.96 1 SDHB 97.32 1 SDHD 82.93 1 SEPSECS 99.78 1 SGO1 99.90 1 SHANK3 98.45 1 SLC13A3 99.98 1 SLC16A2 99.97 1 SLC17A5 99.71 1 SLC20A2 99.95 1 SLC25A12 99.72 1 SLC44A1 99.90 1 SLC7A2 99.97 1 SNAP29 99.85 1 SNORD118 100.00 1 SOX10 100.00 1 SPG11 99.89 1 STN1 99.88 1 STX11 100.00 1 STXBP2 100.00 1 SUCLA2 99.96 1 SUMF1 99.95 1 SUOX 100.00 1 SURF1 100.00 1 TACO1 100.00 1 TMEM106B 99.92 1 TMEM63A 99.91 1 ACD 99.99 1 TREM2 100.00 1 TREX1 100.00 1 TSEN54 100.00 1 TTR 100.00 1 TUBB4A 100.00 1 TWNK 100.00 1 TYMP 99.87 1 TYROBP 99.95 1 UBTF 99.99 1 UFM1 99.25 1 UNC13D 100.00 1 VPS11 99.99 1 WARS2 97.72 1 WT1 99.99 1 XPR1 99.13 1 ZFYVE26 100.00 1 -
Neuroendocrine tumor (NET) (9 genes) - KUL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments MEN1 100.00 1 CDKN1B 10.00 1 RET 100.00 1 SDHB 100.00 1 SDHD 100.00 1 SDHC 100.00 1 SDHA 100.00 1 SDHAF2 100.00 1 VHL 100.00 1 -
Onco-endocine pathologies (50 genes) - UCL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments AIP 100.00 1 Part of Custom Onco-endocrino panel ALK 100.00 1 Part of Custom Onco-endocrino panel ARMC5 100.00 1 Part of Custom Onco-endocrino panel AXIN2 100.00 1 Part of Custom Onco-endocrino panel BAP1 100.00 1 Part of Custom Onco-endocrino panel CDK4 100.00 1 Part of Custom Onco-endocrino panel CDKN1B 100.00 1 Part of Custom Onco-endocrino panel CDKN2A 100.00 1 Part of Custom Onco-endocrino panel CYLD 100.00 1 Part of Custom Onco-endocrino panel DNMT3A 100.00 1 Part of Custom Onco-endocrino panel EGLN1 100.00 1 Part of Custom Onco-endocrino panel EGLN2 100.00 1 Part of Custom Onco-endocrino panel EGLN3 100.00 1 Part of Custom Onco-endocrino panel EPAS1 100.00 1 Part of Custom Onco-endocrino panel FH 100.00 1 Part of Custom Onco-endocrino panel FLCN 100.00 1 Part of Custom Onco-endocrino panel GOT2 100.00 1 Part of Custom Onco-endocrino panel HIF1A 100.00 1 Part of Custom Onco-endocrino panel HOXB13 100.00 1 Part of Custom Onco-endocrino panel IDH3B 100.00 1 Part of Custom Onco-endocrino panel KIF1B 100.00 1 Part of Custom Onco-endocrino panel KIT 100.00 1 Part of Custom Onco-endocrino panel KMT2D 100.00 1 Part of Custom Onco-endocrino panel MAX 100.00 1 Part of Custom Onco-endocrino panel MC1R 100.00 1 Part of Custom Onco-endocrino panel MDH1 100.00 1 Part of Custom Onco-endocrino panel MDH2 100.00 1 Part of Custom Onco-endocrino panel MEN1 100.00 1 Part of Custom Onco-endocrino panel MERTK 100.00 1 Part of Custom Onco-endocrino panel MET 100.00 1 Part of Custom Onco-endocrino panel MITF 100.00 1 Part of Custom Onco-endocrino panel NF1 100.00 1 Part of Custom Onco-endocrino panel PDGFRA 100.00 1 Part of Custom Onco-endocrino panel PHOX2B 100.00 1 Part of Custom Onco-endocrino panel POT1 100.00 1 Part of Custom Onco-endocrino panel PRKAR1A 100.00 1 Part of Custom Onco-endocrino panel PTCH1 100.00 1 Part of Custom Onco-endocrino panel PTCH2 100.00 1 Part of Custom Onco-endocrino panel RB1 100.00 1 Part of Custom Onco-endocrino panel RET 100.00 1 Part of Custom Onco-endocrino panel SDHA 100.00 1 Part of Custom Onco-endocrino panel SDHAF1 100.00 1 Part of Custom Onco-endocrino panel SDHAF2 100.00 1 Part of Custom Onco-endocrino panel SDHAF3 100.00 1 Part of Custom Onco-endocrino panel SDHB 100.00 1 Part of Custom Onco-endocrino panel SDHC 100.00 1 Part of Custom Onco-endocrino panel SDHD 100.00 1 Part of Custom Onco-endocrino panel SUFU 100.00 1 Part of Custom Onco-endocrino panel TMEM127 100.00 1 Part of Custom Onco-endocrino panel VHL 100.00 1 Part of Custom Onco-endocrino panel -
Paraganglioma and pheochromocytoma (29 genes) - UCL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments DNMT3A 100.00 1 Part of custom Onco-endocrino panel EGLN1 100.00 1 Part of custom Onco-endocrino panel EGLN2 100.00 1 Part of custom Onco-endocrino panel EGLN3 100.00 1 Part of custom Onco-endocrino panel EPAS1 100.00 1 Part of custom Onco-endocrino panel FH 100.00 1 Part of custom Onco-endocrino panel GOT2 100.00 1 Part of custom Onco-endocrino panel HIF1A 100.00 1 Part of custom Onco-endocrino panel IDH3B 100.00 1 Part of custom Onco-endocrino panel KIF1B 100.00 1 Part of custom Onco-endocrino panel KMT2D 100.00 1 Part of custom Onco-endocrino panel MAX 100.00 1 Part of custom Onco-endocrino panel MDH1 100.00 1 Part of custom Onco-endocrino panel MDH2 100.00 1 Part of custom Onco-endocrino panel MEN1 100.00 1 Part of custom Onco-endocrino panel MERTK 100.00 1 Part of custom Onco-endocrino panel MET 100.00 1 Part of custom Onco-endocrino panel NF1 100.00 1 Part of custom Onco-endocrino panel PRKAR1A 100.00 1 Part of custom Onco-endocrino panel RET 100.00 1 Part of custom Onco-endocrino panel SDHA 100.00 1 Part of custom Onco-endocrino panel SDHAF1 100.00 1 Part of custom Onco-endocrino panel SDHAF2 100.00 1 Part of custom Onco-endocrino panel SDHAF3 100.00 1 Part of custom Onco-endocrino panel SDHB 100.00 1 Part of custom Onco-endocrino panel SDHC 100.00 1 Part of custom Onco-endocrino panel SDHD 100.00 1 Part of custom Onco-endocrino panel TMEM127 100.00 1 Part of custom Onco-endocrino panel VHL 100.00 1 Part of custom Onco-endocrino panel -
Paraganglioma-pheochromocytoma (10 genes) - UGent
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments SDHA SDHB SDHC SDHD MAX TMEM127 SDHAF2 VHL RET MET -
Paraganglioma-pheochromocytoma (7 genes) - KUL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments SDHA 100.00 1 SDHB 100.00 1 SDHC 100.00 1 SDHD 100.00 1 SDHAF2 100.00 1 RET 100.00 1 VHL 100.00 1 -
Pediatric oncopredisposition - UGent
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments A2ML1 99.97 1 ABCB11 99.86 1 ACD 100.00 1 AIP 99.99 1 ALK 99.93 1 APC 99.97 1 ASXL1 100.00 1 ATM 99.83 1 RNF2 99.99 1 BLM 99.80 1 BMPR1A 99.58 1 BRAF 99.78 1 BRCA1 98.33 1 BRCA2 99.99 1 BRIP1 99.39 1 BUB1B 100.00 1 CBL 99.95 1 CD27 99.95 1 CD70 99.99 1 CDC73 99.60 1 CDH1 99.98 1 CDK4 100.00 1 CDKN1B 100.00 1 CDKN1C 100.00 1 CDKN2A 100.00 1 CEBPA 100.00 1 CEP57 99.92 1 CREBBP 99.97 1 CTC1 100.00 1 CTLA4 99.99 1 CTR9 99.98 1 DDB2 100.00 1 DICER1 99.96 1 DIS3L2 99.90 1 DKC1 99.59 1 DNAJC21 99.67 1 EFL1 99.83 1 EGLN1 99.86 1 EGLN2 99.97 1 ELP1 99.96 1 EPAS1 99.99 1 EPCAM 99.89 1 ERCC2 99.98 1 ERCC3 99.90 1 ERCC4 99.92 1 ERCC5 99.99 1 ERCC6L2 99.94 1 ETV6 99.99 1 EZH2 99.89 1 FANCA 100.00 1 FANCB 99.24 1 FANCC 99.98 1 FANCD2 99.86 1 FANCE 99.99 1 FANCF 100.00 1 FANCG 100.00 1 FANCI 99.96 1 FANCL 99.67 1 FAS 99.99 1 FBXW7 99.90 1 FH 99.95 1 GATA1 99.97 1 GATA2 99.99 1 GPC3 99.60 1 GPC4 99.89 1 GPR161 99.92 1 HAVCR2 99.93 1 HRAS 100.00 1 IKZF1 99.92 1 ITK 99.91 1 KRAS 99.13 1 L2HGDH 99.92 1 LIG4 100.00 1 LZTR1 99.46 1 MAP2K1 99.98 1 MAP2K2 99.99 1 MAX 99.96 1 MDH2 99.54 1 MDM4 99.43 1 MEN1 99.98 1 MLH1 99.64 1 MRAS 99.97 1 MSH2 99.23 1 MSH6 99.97 1 MYSM1 94.16 1 NBN 99.93 1 NF1 99.88 1 NF2 100.00 1 NHP2 99.96 1 NOP10 99.99 1 NRAS 99.66 1 NSD1 99.98 1 PALB2 99.71 1 PARN 99.75 1 PAX5 99.82 1 PHOX2B 99.98 1 PIK3CA 99.74 1 PMS2 70.47 1 POLD1 99.96 1 POLE 99.99 1 POLH 99.85 1 POT1 99.91 1 PPP1CB 99.89 1 PRF1 100.00 1 PRKAR1A 100.00 1 PTCH1 99.99 1 PTEN 99.89 1 PTPN11 99.98 1 RAF1 99.97 1 RB1 99.84 1 RECQL4 100.00 1 REST 99.99 1 RET 99.97 1 RIT1 99.78 1 RMRP 100.00 1 RPL11 99.81 1 RPL15 31.77 1 RPL18 100.00 1 RPL26 30.55 1 RPL27 99.83 1 RPL35 99.99 1 RPL35A 97.55 1 RPL5 28.81 1 RPS10 0.00 1 RPS15A 22.14 1 RPS17 100.00 1 RPS19 100.00 1 RPS24 91.48 1 RPS26 8.99 1 RPS27 27.45 1 RPS28 100.00 1 RPS29 99.96 1 RPS7 88.50 1 RRAS 99.98 1 RRAS2 99.94 1 RTEL1 100.00 1 RUNX1 100.00 1 SAMD9 99.93 1 SAMD9L 99.95 1 SBDS 99.93 1 SDHA 99.98 1 SDHAF2 99.96 1 SDHB 97.32 1 SDHC 99.67 1 SDHD 82.93 1 SETBP1 100.00 1 SH2D1A 98.98 1 SHOC2 99.96 1 SLX4 100.00 1 SMARCA4 99.99 1 SMARCB1 99.99 1 SMARCE1 99.87 1 SOS1 99.68 1 SOS2 99.39 1 SRP72 99.91 1 STK11 100.00 1 SUFU 100.00 1 TERC 98.59 1 TERT 100.00 1 TINF2 100.00 1 TMEM127 99.99 1 TP53 99.98 1 TRIM28 100.00 1 TRIM37 98.19 1 TRIP13 100.00 1 TSC1 99.99 1 TSC2 99.98 1 TSR2 99.96 1 UBE2T 99.89 1 USB1 89.62 1 VHL 100.00 1 WAS 99.90 1 WRAP53 100.00 1 WT1 99.99 1 XPA 99.68 1 XPC 99.98 1 SRP54 99.90 1 -
Pheochromocytoma - paraganglioma syndrome - UGent
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments MAX 100.00 1 RET 100.00 0 SDHA 100.00 1 SDHAF2 100.00 1 SDHB 100.00 1 SDHC 100.00 1 SDHD 100.00 1 TMEM127 100.00 1 VHL 100.00 1 SUCLG2 100.00 0