Belgian Genetic Tests database- Diseases
- Isolated neonatal sclerosing cholangitis
Isolated neonatal sclerosing cholangitis
| Name: |
Isolated neonatal sclerosing cholangitis
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| Description: |
Isolated neonatal sclerosing cholangitis is a rare, genetic, biliary tract disease characterized by severe neonatal-onset cholangiopathy with patent bile ducts and absence of ichthyosiform skin lesions. Patients present with jaundice, acholic stools, hepatosplenomegaly and high serum gamma-glutamyltransferase activity. Liver histology shows portal fibrosis, ductular proliferation, hepatocellular metallothionein deposits, and intralobular bile-pigment accumulations. Some patients may also have renal disease.
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| ORPHAcode: |
480556
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| XREF(s): | |
| Analyte(s): | |
| Created: |
13 May 2019 - 01:02
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| Changed: |
22 Jun 2023 - 16:14
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Cholestasis (40 genes) - UCL
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ABCB11 100.00 1 Part of Gastro-pneumo panel ABCB4 100.00 1 Part of Gastro-pneumo panel AKR1D1 100.00 1 Part of Gastro-pneumo panel AMACR 100.00 1 Part of Gastro-pneumo panel ATP8B1 100.00 1 Part of Gastro-pneumo panel BAAT 100.00 1 Part of Gastro-pneumo panel BCS1L 100.00 1 Part of Gastro-pneumo panel CC2D2A 100.00 1 Part of Gastro-pneumo panel CLDN1 100.00 1 Part of Gastro-pneumo panel CYP27A1 100.00 1 Part of Gastro-pneumo panel CYP7B1 100.00 1 Part of Gastro-pneumo panel DCDC2 100.00 1 Part of Gastro-pneumo panel DGUOK 100.00 1 Part of Gastro-pneumo panel HNF1B 100.00 1 Part of Gastro-pneumo panel HSD3B7 100.00 1 Part of Gastro-pneumo panel INVS 100.00 1 Part of Gastro-pneumo panel JAG1 100.00 1 Part of Gastro-pneumo panel MKS1 100.00 1 Part of Gastro-pneumo panel MPV17 100.00 1 Part of Gastro-pneumo panel NOTCH2 100.00 1 Part of Gastro-pneumo panel NPC1 100.00 1 Part of Gastro-pneumo panel NPC2 100.00 1 Part of Gastro-pneumo panel NPHP1 100.00 1 Part of Gastro-pneumo panel NPHP3 100.00 1 Part of Gastro-pneumo panel NPHP4 100.00 1 Part of Gastro-pneumo panel NR1H4 100.00 1 Part of Gastro-pneumo panel PKHD1 100.00 1 Part of Gastro-pneumo panel PNPLA3 0.00 1 Part of Gastro-pneumo panel / only rs738409 and rs2294918 POLG 100.00 1 Part of Gastro-pneumo panel SLC25A13 100.00 1 Part of Gastro-pneumo panel SMPD1 100.00 1 Part of Gastro-pneumo panel TALDO1 100.00 1 Part of Gastro-pneumo panel TJP2 100.00 1 Part of Gastro-pneumo panel TM6SF2 0.00 1 Part of Gastro-pneumo panel / only rs58542926 TMC4 0.00 1 Part of Gastro-pneumo panel / only rs641738 TMEM216 100.00 1 Part of Gastro-pneumo panel TRMU 100.00 1 Part of Gastro-pneumo panel UGT1A1 100.00 1 Part of Gastro-pneumo panel VIPAS39 100.00 1 Part of Gastro-pneumo panel VPS33B 100.00 1 Part of Gastro-pneumo panel -
Ciliopathy (120 genes) - UGent
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ACVR2B 99.99 0 ADAMTS9 99.94 0 AHI1 99.86 0 ALMS1 99.90 0 ANKS6 100.00 0 ARL13B 99.53 0 ARL3 99.98 0 ARL6 99.90 0 ARMC9 99.77 0 B9D1 99.80 0 B9D2 99.88 0 BBIP1 99.99 0 BBS1 100.00 0 BBS10 99.98 0 BBS12 100.00 0 BBS2 99.90 0 BBS4 99.88 0 BBS5 99.00 0 BBS7 99.42 0 BBS9 99.75 0 C2CD3 99.88 0 CBY1 100.00 0 CC2D2A 99.95 0 CCDC103 99.68 0 CCDC172 99.85 0 CCDC28B 99.99 0 CCDC32 99.97 0 CCDC39 99.74 0 CCDC40 100.00 0 CCDC65 99.80 0 CCDC96 100.00 0 CCNO 100.00 0 CENPF 99.97 0 CEP104 99.99 0 CEP120 99.90 0 CEP164 99.99 0 CEP290 98.10 0 CEP295 99.94 0 CEP41 99.99 0 CEP55 99.92 0 CEP83 98.68 0 CFAP251 99.98 0 CFAP298 99.96 0 CFAP300 99.47 0 CFAP410 100.00 0 CFAP418 100.00 0 CFAP44 99.75 0 CFAP53 99.95 0 CFAP69 99.09 0 CFC1 21.93 0 CILK1 99.69 0 CPLANE1 99.81 0 CRB2 99.95 0 CSPP1 98.31 0 DCDC2 99.96 0 DDX59 99.67 0 DEUP1 99.86 0 DHCR7 99.97 0 DLG5 99.91 0 DNAAF1 99.99 0 DNAAF11 99.80 0 DNAAF2 99.91 0 DNAAF3 99.99 0 DNAAF4 99.78 0 DNAAF5 99.99 0 DNAAF6 98.73 0 DNAH1 99.98 0 DNAH11 99.93 0 DNAH5 99.98 0 DNAH8 99.84 0 DNAI1 99.92 0 DNAI2 99.86 0 DNAJB13 99.91 0 DNAH9 99.79 0 DRC1 99.93 0 DYNC2H1 99.66 0 DYNC2I1 99.99 0 DYNC2I2 99.98 0 DYNC2LI1 99.94 0 DYNLT2B 100.00 0 EVC 99.95 0 EVC2 99.97 0 EXOC3L2 99.88 0 EXOC6B 99.41 0 EXOC8 99.99 0 EXTL3 99.99 0 FAM149B1 99.69 0 FAM166B 99.99 0 FOXF1 99.99 0 FUZ 99.99 0 GAS2L2 100.00 0 GAS8 100.00 0 GLI3 100.00 0 GLIS2 100.00 0 HNF1B 100.00 0 HYDIN 81.28 0 HYLS1 100.00 0 IFT122 99.98 0 IFT140 100.00 0 IFT172 99.98 0 IFT27 100.00 0 IFT43 99.97 0 IFT52 99.82 0 IFT74 99.71 0 IFT80 99.69 0 IFT81 94.64 0 INPP5E 99.85 0 INTS13 98.20 0 INTU 99.92 0 INVS 99.94 0 IQCB1 99.72 0 IQCE 99.77 0 KATNIP 99.13 0 KCTD3 99.75 0 KIAA0586 95.75 0 KIAA0753 100.00 0 KIF14 97.80 0 KIF3B 99.99 0 KIF7 100.00 0 LBR 99.66 0 LCA5 99.89 0 LRRC34 99.52 0 LRRC45 99.98 0 LRRC56 99.98 0 LZTFL1 100.00 0 MAPKBP1 99.98 0 MCIDAS 100.00 0 MKKS 100.00 0 MKS1 99.92 0 MMP21 99.99 0 MRE11 99.93 0 NCAPG2 99.97 0 NEK1 99.83 0 NEK9 99.96 0 NME5 99.81 0 NME8 99.83 0 NPHP1 99.05 0 NPHP3 99.89 0 NPHP4 99.98 0 OCRL 99.89 0 ODAD1 96.04 0 ODAD2 98.19 0 ODAD3 99.96 0 ODAD4 99.85 0 OFD1 99.68 0 PDE6D 99.94 0 PIBF1 99.90 0 PIK3C2A 99.92 0 PKD1 99.98 0 PKD2 99.91 0 PKHD1 99.95 0 PMFBP1 99.89 0 PMM2 99.93 0 POC1A 99.98 0 POC1B 100.00 0 RAB28 99.97 0 RPGR 94.45 0 RPGRIP1L 96.35 0 RSPH1 99.87 0 RSPH3 99.94 0 RSPH4A 99.95 0 RSPH9 99.99 0 SBDS 99.93 0 SCLT1 95.17 0 SCNM1 99.47 0 SDCCAG8 100.00 0 SLC30A7 94.71 0 SPAG1 99.78 0 STK36 99.98 0 SUFU 100.00 0 TBC1D32 99.75 0 TCTN1 99.92 0 TCTN2 99.99 0 TCTN3 99.92 0 TMEM107 100.00 0 TMEM138 100.00 0 TMEM17 99.96 0 TMEM216 99.98 0 TMEM218 99.94 0 TMEM231 88.88 0 TMEM237 99.30 0 TMEM260 99.90 0 TMEM67 99.69 0 TOGARAM1 99.93 0 TOPORS 99.99 0 TRAF3IP1 99.96 0 TRIM32 100.00 0 TTC21B 99.50 0 TTC23 99.87 0 TTC26 99.97 0 TTC6 99.77 0 TTC8 99.67 0 TUBGCP4 99.80 0 TULP1 99.99 0 TULP3 99.91 0 TXNDC15 99.78 0 VHL 100.00 0 VPS13B 99.90 0 WDPCP 99.87 0 WDR19 99.80 0 WDR35 99.92 0 XPNPEP3 99.99 0 ZFYVE19 99.99 0 ZIC3 99.90 0 ZMYND10 99.99 0 ZNF423 98.94 0 ZSWIM6 98.94 0 -
Ciliopathy, polycystic kidney and liver diseases, ADTKD, nephronophtisis, Bardet-Biedl syndromes and kidney cancers (146 genes) - IPG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ADAMTS9 100.00 1 NM_182920.2 ALG8 100.00 1 NM_024079.5 ANKS6 100.00 1 NM_173551.5 ARL6 100.00 1 NM_001278293.3 BBIP1 100.00 1 NM_001195305.3 BBS1 100.00 1 NM_024649.5 BBS10 100.00 1 NM_024685.4 BBS12 100.00 1 NM_152618.3 BBS2 100.00 1 NM_031885.5 BBS4 100.00 1 NM_033028.5 BBS5 100.00 1 NM_152384.3 BBS7 100.00 1 NM_176824.3 BBS9 100.00 1 NM_198428.3 CDC73 100.00 1 NM_024529.5 CEP164 100.00 1 NM_014956.5 CEP290 100.00 1 NM_025114.4 CEP83 100.00 1 NM_016122.3 COL4A1 100.00 1 NM_001845.6 COL4A3 100.00 1 NM_000091.5 COL4A4 100.00 1 NM_000092.5 COL4A5 100.00 1 NM_033380.3 DCDC2 100.00 1 NM_016356.5 DNAJB11 100.00 1 NM_016306.6 DZIP1L 100.00 1 NM_173543.3 EYA1 100.00 1 NM_000503.6 FAN1 100.00 1 NM_014967.5 FH 100.00 1 NM_000143.4 FLCN 100.00 1 NM_144997.7 GANAB 100.00 1 NM_198334.3 GATA3 100.00 1 NM_001002295.2 GATM 100.00 1 NM_001482.3 GLIS2 100.00 1 NM_032575.3 HNF1B 100.00 1 NM_000458.4 IFT172 100.00 1 NM_015662.3 IFT27 100.00 1 NM_001177701.3 INVS 100.00 1 NM_014425.5 IQCB1 100.00 1 NM_001023570.4 LRP5 100.00 1 NM_002335.4 LRP6 100.00 1 NM_002336.3 LZTFL1 100.00 1 NM_020347.4 MAPKBP1 100.00 1 NM_014994.3 MET 100.00 1 NM_000245.4 MKKS 100.00 1 NM_170784.3 MKS1 100.00 1 NM_017777.4 NEK8 100.00 1 NM_178170.3 NOTCH2 99.00 1 NM_024408.4 NPHP1 100.00 1 NM_001128178.3 NPHP3 100.00 1 NM_153240.5 NPHP4 100.00 1 NM_015102.5 OFD1 100.00 1 NM_003611.3 PAX2 100.00 1 NM_000278.5 PKD1 100.00 1 NM_001009944.3 PKD2 100.00 1 NM_000297.4 PKHD1 100.00 1 NM_138694.4 PMM2 0.00 1 NM_000303.2 une seule position PRKCSH 100.00 1 NM_001289104.2 PTEN 100.00 1 NM_000314.8 REN 100.00 1 NM_000537.4 RPGRIP1L 96.00 1 NM_015272.5 SDCCAG8 100.00 1 NM_006642.5 SDHB 100.00 1 NM_003000.3 SDHD 100.00 1 NM_003002.4 SEC61A1 100.00 1 NM_013336.4 SEC63 100.00 1 NM_007214.5 TMEM67 100.00 1 NM_153704.6 TRIM32 100.00 1 NM_012210.4 TSC1 100.00 1 NM_000368.5 TSC2 100.00 1 NM_000548.5 TTC21B 100.00 1 NM_024753.5 TTC8 100.00 1 NM_144596.4 UMOD 100.00 1 NM_003361.4 VHL 100.00 1 NM_000551.4 WDPCP 100.00 1 NM_015910.7 WDR19 100.00 1 NM_025132.4 XPNPEP3 100.00 1 NM_022098.4 ZNF423 100.00 1 NM_001379286.1 AHI1 100.00 1 NM_001134831.2 ALG5 100.00 1 NM_013338.5 ALG9 100.00 1 NM_024740.2 ARL13B 100.00 1 NM_001174150.2 ARL3 100.00 1 NM_004311.4 ARMC9 100.00 1 NM_001352754.2 ATXN10 100.00 1 NM_013236.4 B9D1 100.00 1 NM_015681.6 B9D2 100.00 1 NM_030578.4 BAP1 100.00 1 NM_004656.4 C2CD3 100.00 1 NM_001286577.2 CC2D2A 100.00 1 NM_001378615.1 CCDC28B 100.00 1 NM_024296.5 CEP104 100.00 1 NM_014704.4 CEP120 100.00 1 NM_001375405.1 CEP41 100.00 1 NM_018718.3 CFAP418 100.00 1 NM_177965.4 CPLANE1 100.00 1 NM_001384732.1 CSPP1 100.00 1 NM_001382391.1 CYP24A1 100.00 1 NM_000782.5 DLG5 100.00 1 NM_004747.4 DYNC2H1 100.00 1 NM_001377.3 DYNC2I1 100.00 1 NM_018051.5 DYNC2I2 100.00 1 NM_052844.4 DYNC2LI1 100.00 1 NM_016008.4 DYNLT2B 100.00 1 NM_152773.5 EVC 100.00 1 NM_153717.3 EVC2 100.00 1 NM_147127.5 FAM149B1 100.00 1 NM_173348.2 HNF1A 100.00 1 NM_000545.8 HYLS1 100.00 1 NM_001134793.2 IFT122 100.00 1 NM_052989.3 IFT140 100.00 1 NM_014714.4 IFT43 100.00 1 NM_001102564.3 IFT52 100.00 1 NM_016004.5 IFT74 100.00 1 NM_025103.4 IFT80 100.00 1 NM_020800.3 IFT81 100.00 1 NM_014055.4 INPP5E 100.00 1 NM_019892.6 INTU 100.00 1 NM_015693.4 JAG1 100.00 1 NM_000214.3 KATNIP 100.00 1 NM_015202.5 KIAA0586 100.00 1 NM_001329943.3 KIAA0753 100.00 1 NM_014804.3 KIF14 100.00 1 NM_014875.3 KIF7 100.00 1 NM_198525.3 NEK1 100.00 1 NM_001199397.3 PARN 100.00 1 NM_002582.4 PDE6D 100.00 1 NM_002601.4 PIBF1 100.00 1 NM_006346.4 POC1B 100.00 1 NM_172240.3 RNF139 100.00 1 NM_007218.4 SDHA 100.00 1 NM_004168.4 SDHC 100.00 1 NM_003001.5 SEC61B 100.00 1 NM_006808.3 SLC41A1 100.00 1 NM_173854.6 SREBF1 100.00 1 NM_004176.5 SUFU 100.00 1 NM_016169.4 TCTN1 100.00 1 NM_001082538.3 TCTN2 100.00 1 NM_024809.5 TCTN3 100.00 1 NM_015631.6 TFAP2A 100.00 1 NM_001372066.1 TMEM107 100.00 1 NM_183065.4 TMEM138 100.00 1 NM_016464.5 TMEM216 100.00 1 NM_001173990.3 TMEM218 100.00 1 NM_001258244.2 TMEM231 100.00 1 NM_001077418.3 TMEM237 100.00 1 NM_001044385.3 TOGARAM1 100.00 1 NM_001308120.2 TRAF3IP1 100.00 1 NM_015650.4 TXNDC15 100.00 1 NM_024715.4 WDR35 100.00 1 NM_020779.4