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  2. Autosomal recessive non-syndromic intellectual disability

Autosomal recessive non-syndromic intellectual disability

Disease Export to PDF
Name:
Autosomal recessive non-syndromic intellectual disability
ORPHAcode:
88616
Synonyms:
AR-NSID
NS-ARID
XREF(s):
Orphanet
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
ICD-10
ICD-10
ICD-10
ICD-10
OMIM
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OMIM
OMIM
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OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
OMIM
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OMIM
Analyte(s):
DCPS
B3GALNT2
IMPA1
ABCA2
CHKA
GRIA1
YIF1B
AIMP1
UFSP2
CRBN
TUSC3
TECR
GRIK2
WASHC4
TRAPPC9
PRSS12
MED23
ST3GAL3
CRADD
ZC3H14
NSUN2
LINS1
PGAP1
METTL23
CLIP1
FBXO31
NDST1
FMN2
EDC3
HNMT
EZR
LMAN2L
NEMF
GRM7
IQSEC1
TNIK
NCDN
UBE4A
TTC5
PIGC
SLC45A1
GEMIN5
FRRS1L
ALKBH8
MBOAT7
C12ORF4
SARS1
RSRC1
MED25
NAA20
CC2D1A
MAN1B1
TPR
KDM5B
EEF1B2
Created:
13 May 2019 - 01:02
Changed:
22 Jun 2023 - 16:14
  • Congenital disorders of glycosylation (79 genes) - KUL
    Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments
    ALDOB 95.00 0 NM_000035.3/ interpretable range CS1>95%
    ALG1 95.00 0 NM_019109.4/ interpretable range CS1>95%
    ALG10 95.00 0 NM_032834.3/ interpretable range CS1>95%
    ALG11 95.00 0 NM_001004127.2/ interpretable range CS1>95%
    ALG12 95.00 0 NM_024105.3/ interpretable range CS1>95%
    ALG13 95.00 0 NM_001099922.2/ interpretable range CS1>95%
    ALG14 95.00 0 NM_144988.3/ interpretable range CS1>95%
    ALG2 95.00 0 NM_033087.3/ interpretable range CS1>95%
    ALG3 95.00 0 NM_005787.5/ interpretable range CS1>95%
    ALG5 95.00 0 NM_013338.4/ interpretable range CS1>95%
    ALG6 95.00 0 NM_013339.3/ interpretable range CS1>95%
    ALG8 95.00 0 NM_024079.4/ interpretable range CS1>95%
    ALG9 95.00 0 NM_024740.2/ interpretable range CS1>95%
    ATP6V0A2 95.00 0 NM_012463.3/ interpretable range CS1>95%
    ATP9B 95.00 0 NM_198531.4/ interpretable range CS1>95%
    B3GLCT 95.00 0 NM_194318.3/ interpretable range CS1>95%
    B4GALT1 95.00 0 NM_001497.3/ interpretable range CS1>95%
    COG1 95.00 0 NM_018714.2/ interpretable range CS1>95%
    COG2 95.00 0 NM_007357.2/ interpretable range CS1>95%
    COG3 95.00 0 NM_031431.3/ interpretable range CS1>95%
    COG4 95.00 0 NM_015386.2/ interpretable range CS1>95%
    COG5 95.00 0 NM_006348.3/ interpretable range CS1>95%
    COG6 95.00 0 NM_020751.2/ interpretable range CS1>95%
    COG7 95.00 0 NM_153603.3/ interpretable range CS1>95%
    COG8 95.00 0 NM_032382.4/ interpretable range CS1>95%
    DAD1 95.00 0 NM_001344.3/ interpretable range CS1>95%
    DDOST 95.00 0 NM_005216.4/ interpretable range CS1>95%
    DHDDS 95.00 0 NM_024887.3/ interpretable range CS1>95%
    DOLK 95.00 0 NM_014908.3/ interpretable range CS1>95%
    DPAGT1 95.00 0 NM_001382.3/ interpretable range CS1>95%
    DPM1 95.00 0 NM_003859.2/ interpretable range CS1>95%
    DPM2 95.00 0 NM_003863.3/ interpretable range CS1>95%
    DPM3 95.00 0 NM_153741.1/ interpretable range CS1>95%
    FKRP 95.00 0 NM_024301.4/ interpretable range CS1>95%
    FKTN 95.00 0 NM_001079802.1/ interpretable range CS1>95%
    FUT1 95.00 0 NM_000148.3/ interpretable range CS1>95%
    GALE 95.00 0 NM_000403.3/ interpretable range CS1>95%
    GALK1 95.00 0 NM_000154.1/ interpretable range CS1>95%
    GALT 95.00 0 NM_000155.3/ interpretable range CS1>95%
    GFPT1 95.00 0 NM_002056.3/ interpretable range CS1>95%
    GMPPA 95.00 0 NM_205847.2/ interpretable range CS1>95%
    GMPPB 95.00 0 NM_013334.3/ interpretable range CS1>95%
    GNE 95.00 0 NM_001128227.2/ interpretable range CS1>95%
    LARGE1 95.00 0 NM_004737.6/ interpretable range CS1>95%
    MAGT1 95.00 0 NM_032121.5/ interpretable range CS1>95%
    MAN1B1 95.00 0 NM_016219.4/ interpretable range CS1>95%
    MGAT1 95.00 0 NM_001114618.1/ interpretable range CS1>95%
    MGAT2 95.00 0 NM_002408.3/ interpretable range CS1>95%
    MOGS 95.00 0 NM_006302.2/ interpretable range CS1>95%
    MPDU1 95.00 0 NM_004870.3/ interpretable range CS1>95%
    MPI 95.00 0 NM_002435.2/ interpretable range CS1>95%
    OST4 95.00 0 NM_001134693.1/ interpretable range CS1>95%
    PGM1 95.00 0 NM_002633.2/ interpretable range CS1>95%
    PGM2 95.00 0 NM_018290.3/ interpretable range CS1>95%
    PGM3 95.00 0 NM_001199917.1/ interpretable range CS1>95%
    PIGA 95.00 0 NM_002641.3/ interpretable range CS1>95%
    PIGL 95.00 0 NM_004278.3/ interpretable range CS1>95%
    PIGM 95.00 0 NM_145167.2/ interpretable range CS1>95%
    PIGN 95.00 0 NM_176787.4/ interpretable range CS1>95%
    PIGV 95.00 0 NM_017837.3/ interpretable range CS1>95%
    PMM2 95.00 0 NM_000303.2/ interpretable range CS1>95%
    POMGNT1 95.00 0 NM_017739.3/ interpretable range CS1>95%
    POMT1 95.00 0 NM_007171.3/ interpretable range CS1>95%
    POMT2 95.00 0 NM_013382.5/ interpretable range CS1>95%
    RFT1 95.00 0 NM_052859.3/ interpretable range CS1>95%
    RPN1 95.00 0 NM_002950.3/ interpretable range CS1>95%
    RPN2 95.00 0 NM_002951.4/ interpretable range CS1>95%
    SEC23B 95.00 0 NM_032985.5/ interpretable range CS1>95%
    SLC35A1 95.00 0 NM_006416.4/ interpretable range CS1>95%
    SLC35A3 95.00 0 NM_012243.2/ interpretable range CS1>95%
    SLC35C1 95.00 0 NM_018389.4/ interpretable range CS1>95%
    SLC35D1 95.00 0 NM_015139.2/ interpretable range CS1>95%
    SRD5A3 95.00 0 NM_024592.4/ interpretable range CS1>95%
    ST3GAL3 95.00 0 NM_174963.4/ interpretable range CS1>95%
    ST3GAL5 95.00 0 NM_003896.3/ interpretable range CS1>95%
    STT3A 95.00 0 NM_152713.4/ interpretable range CS1>95%
    STT3B 95.00 0 NM_178862.2/ interpretable range CS1>95%
    TMEM165 95.00 0 NM_018475.4/ interpretable range CS1>95%
    TUSC3 95.00 0 NM_006765.3/ interpretable range CS1>95%
  • Hypogonadotropic Hypogonadism/Kallmann (61 genes) - ULG
    Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments
    LEPR 98.65 0 NM_002303
    KISS1 99.66 0 NM_002256
    RD3 99.63 0 NM_183059
    HS6ST1 92.39 0 NM_004807
    CXCR4 99.63 0 NM_003467
    CCDC141 97.45 0 NM_173648
    NRP2 99.58 0 NM_201266
    IL17RD 94.68 0 NM_017563
    HESX1 98.36 0 NM_003865
    PROK2 90.75 0 NM_001126128
    GAP43 97.81 0 NM_001130064
    PLXNA1 99.67 0 NM_032242
    SOX2 95.94 0 NM_003106
    KLB 99.62 0 NM_175737
    GNRHR 99.45 0 NM_000406
    TACR3 99.41 0 NM_001059
    OTUD4 98.02 0 NM_001102653
    PCSK1 99.63 0 NM_000439
    SOX9 99.60 0 NM_001035235
    SPRY4 99.69 0 NM_030964
    PROP1 99.69 0 NM_006261
    GLI3 99.55 0 NM_000168
    SEMA3E 99.45 0 NM_012431
    SEMA3A 99.53 0 NM_006080
    FEZF1 99.43 0 NM_001024613
    LEP 99.69 0 NM_000230
    FGF17 99.67 0 NM_003867
    GNRH1 99.54 0 NM_000825
    FGFR1 99.69 0 NM_023110
    CHD7 99.53 0 NM_017780
    TRAPPC9 99.57 0 NM_031466
    PALM2 98.64 0 NM_001037293
    NOTCH1 96.74 0 NM_017617
    NSMF 93.42 0 NM_015537
    MASTL 99.20 0 NM_032844
    FGF8 78.88 0 NM_033163
    WDR11 99.33 0 NM_018117
    CCKBR 99.61 0 NM_176875
    FSHB 99.64 0 NM_000510
    PLEKHA5 98.89 0 NM_001143821
    PDE3A 99.05 0 NM_000921
    TSPAN11 99.69 0 NM_001080509
    AMN1 99.52 0 NM_001113402
    TAC3 99.64 0 NM_013251
    DUSP6 99.68 0 NM_001946
    POLR3B 99.29 0 NM_018082
    CRY1 99.26 0 NM_004075
    NOS1 99.42 0 NM_000620
    SEMA7A 92.63 0 NM_003612
    DCC 99.55 0 NM_005215
    KISS1R 85.01 0 NM_032551
    AXL 99.69 0 NM_021913
    LHB 99.69 0 NM_000894
    PROKR2 99.69 0 NM_144773
    JAG1 97.49 0 NM_000214
    FLRT3 99.67 0 NM_198391
    SOX10 93.26 0 NM_006941
    ANOS1 93.11 0 NM_000216
    NR0B1 99.34 0 NM_000475
    FGF13 99.32 0 NM_004114
    SOX3 83.29 0 NM_005634
  • Rare epilepsy with developmental delay (> 240 genes) - UZA
    Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments
    AARS1 100.00 0 No comment
    ABAT 100.00 0 No comment
    ACTB 99.92 0 No comment
    ACTG1 100.00 0 No comment
    ACTL6B 99.16 0 No comment
    ACY1 99.96 0 No comment
    ADAR 99.99 0 No comment
    ADPRS 91.11 0 No comment
    ADSL 99.73 0 No comment
    AFG3L2 95.23 0 No comment
    ALDH7A1 99.83 0 No comment
    ALG11 100.00 0 No comment
    ALG13 95.29 0 No comment
    AMT 100.00 0 No comment
    ANKRD11 99.99 0 No comment
    AP3B2 97.74 0 No comment
    AP4S1 87.73 0 No comment
    ARFGEF2 99.81 0 No comment
    ARHGEF9 99.89 0 No comment
    ARID1B 87.88 0 No comment
    ARV1 89.03 0 No comment
    ARX 59.32 0 No comment
    ASXL3 99.74 0 No comment
    ATN1 99.12 0 No comment
    ATP1A2 99.88 0 No comment
    ATP1A3 99.81 0 No comment
    BRAT1 99.96 0 No comment
    BSCL2 100.00 0 No comment
    CACNA1A 92.18 0 No comment
    CACNA1B 93.35 0 No comment
    CACNA1E 99.99 0 No comment
    CACNA1G 99.63 0 No comment
    CACNA2D2 94.11 0 No comment
    CASK 99.78 0 No comment
    CDK13 88.47 0 No comment
    CDKL5 97.71 0 No comment
    CERS1 76.68 0 No comment
    CERT1 99.89 0 No comment
    CHD2 99.95 0 No comment
    CLCN4 99.94 0 No comment
    CLN3 99.98 0 No comment
    CLN5 97.84 0 No comment
    CLN6 91.00 0 No comment
    CLN8 100.00 0 No comment
    CLTC 100.00 0 No comment
    CNKSR2 99.28 0 No comment
    CNTNAP2 99.99 0 No comment
    COL18A1 96.27 0 No comment
    COL4A1 98.54 0 No comment
    CPLX1 99.70 0 No comment
    CPT2 97.07 0 No comment
    CSNK2B 100.00 0 No comment
    CSTB 92.54 0 No comment
    CTSD 97.90 0 No comment
    CUX2 98.72 0 No comment
    CYFIP2 99.99 0 No comment
    DCX 99.86 0 No comment
    DDX3X 99.66 0 No comment
    DENND5A 98.99 0 No comment
    DEPDC5 99.97 0 No comment
    DHDDS 99.77 0 No comment
    DMXL2 99.86 0 No comment
    DNM1 94.54 0 No comment
    DNM1L 99.97 0 No comment
    DOCK7 99.35 0 No comment
    DYRK1A 100.00 0 No comment
    EEF1A2 91.59 0 No comment
    EHMT1 98.44 0 No comment
    EPM2A 81.75 0 No comment
    FARS2 99.99 0 No comment
    FGF12 100.00 0 No comment
    FLNA 99.50 0 No comment
    FMN2 92.71 0 No comment
    FMR1 99.71 0 No comment
    FOLR1 100.00 0 No comment
    FOXG1 75.13 0 No comment
    FRRS1L 69.11 0 No comment
    FZR1 100.00 0 No comment
    GABBR2 95.14 0 No comment
    GABRA1 100.00 0 No comment
    GABRA2 100.00 0 No comment
    GABRB1 100.00 0 No comment
    GABRB2 100.00 0 No comment
    GABRB3 98.87 0 No comment
    GABRG2 92.15 0 No comment
    GAD1 100.00 0 No comment
    GAMT 95.00 0 No comment
    GBA1 100.00 0 No comment
    GLDC 96.06 0 No comment
    GNAO1 100.00 0 No comment
    GNB1 100.00 0 No comment
    GNB5 99.70 0 No comment
    GOSR2 99.87 0 No comment
    GPHN 100.00 0 No comment
    GRIA2 100.00 0 No comment
    GRIA3 97.93 0 No comment
    GRIK2 99.97 0 No comment
    GRIN1 99.74 0 No comment
    GRIN2A 100.00 0 No comment
    GRIN2B 100.00 0 No comment
    GRIN2D 61.45 0 No comment
    HCN1 93.52 0 No comment
    HECW2 99.99 0 No comment
    HNRNPU 95.95 0 No comment
    HUWE1 99.62 0 No comment
    IER3IP1 99.80 0 No comment
    IFIH1 99.99 0 No comment
    IQSEC2 91.31 0 No comment
    IRF2BPL 91.18 0 No comment
    ITPA 100.00 0 No comment
    KANSL1 99.98 0 No comment
    KARS1 99.99 0 No comment
    KCNA1 100.00 0 No comment
    KCNA2 100.00 0 No comment
    KCNB1 99.01 0 No comment
    KCNC1 99.52 0 No comment
    KCNH1 99.96 0 No comment
    KCNJ10 100.00 0 No comment
    KCNK4 96.68 0 No comment
    KCNMA1 99.92 0 No comment
    KCNQ2 98.57 0 No comment
    KCNQ3 95.56 0 No comment
    KCNQ5 94.69 0 No comment
    KCNT1 97.66 0 No comment
    KCNT2 100.00 0 No comment
    KCTD7 97.74 0 No comment
    KDM5C 99.69 0 No comment
    KIF1A 99.96 0 No comment
    KIF2A 99.83 0 No comment
    KIF5C 99.91 0 No comment
    KMT2E 99.89 0 No comment
    MAP1B 99.93 0 No comment
    MBD5 100.00 0 No comment
    MECP2 91.83 0 No comment
    MED13L 99.94 0 No comment
    MEF2C 100.00 0 No comment
    MFSD8 100.00 0 No comment
    MOCS1 97.59 0 No comment
    MOCS2 100.00 0 No comment
    MTOR 99.89 0 No comment
    NARS2 99.98 0 No comment
    NBEA 98.89 0 No comment
    NEU1 100.00 0 No comment
    NEXMIF 99.96 0 No comment
    NF1 99.55 0 No comment
    NF2 99.93 0 No comment
    NHLRC1 99.28 0 No comment
    NIPA1 84.21 0 No comment
    NPRL2 100.00 0 No comment
    NPRL3 100.00 0 No comment
    NRXN1 98.90 0 No comment
    NTRK2 100.00 0 No comment
    NUS1 98.46 0 No comment
    OTUD6B 99.73 0 No comment
    PACS2 96.45 0 No comment
    PAFAH1B1 100.00 0 No comment
    PARS2 100.00 0 No comment
    PCDH19 99.80 0 No comment
    PHACTR1 97.55 0 No comment
    PIGA 99.89 0 No comment
    PIGN 99.84 0 No comment
    PIGQ 100.00 0 No comment
    PIGS 100.00 0 No comment
    PIGT 100.00 0 No comment
    PLCB1 99.97 0 No comment
    PLPBP 99.57 0 No comment
    PNKP 99.98 0 No comment
    PNPO 99.98 0 No comment
    POLG 99.86 0 No comment
    PPP2R5D 99.94 0 No comment
    PPP3CA 99.93 0 No comment
    PPT1 100.00 0 No comment
    PRICKLE1 100.00 0 No comment
    PRRT2 100.00 0 No comment
    PTEN 92.28 0 No comment
    PURA 85.06 0 No comment
    QARS1 100.00 0 No comment
    RELN 99.97 0 No comment
    RHOBTB2 99.98 0 No comment
    RNASEH2A 99.99 0 No comment
    RNASEH2B 93.70 0 No comment
    RNASEH2C 95.34 0 No comment
    ROGDI 94.47 0 No comment
    RORA 97.11 0 No comment
    RORB 100.00 0 No comment
    RTN4IP1 100.00 0 No comment
    SAMHD1 100.00 0 No comment
    SCARB2 100.00 0 No comment
    SCN1A 99.91 0 No comment
    SCN1B 95.75 0 No comment
    SCN2A 100.00 0 No comment
    SCN3A 100.00 0 No comment
    SCN8A 99.95 0 No comment
    SERPINI1 99.98 0 No comment
    SETD2 99.95 0 No comment
    SIK1 99.98 0 No comment
    SLC12A5 99.55 0 No comment
    SLC13A5 99.89 0 No comment
    SLC19A3 100.00 0 No comment
    SLC1A2 99.99 0 No comment
    SLC25A12 100.00 0 No comment
    SLC25A22 99.88 0 No comment
    SLC2A1 99.27 0 No comment
    SLC35A2 99.82 0 No comment
    SLC35A3 99.97 0 No comment
    SLC6A1 99.93 0 No comment
    SLC6A8 91.78 0 No comment
    SLC9A6 94.23 0 No comment
    SMARCA2 97.46 0 No comment
    SMC1A 99.50 0 No comment
    SNAP25 100.00 0 No comment
    AFG2A 100.00 0 No comment
    SPTAN1 99.98 0 No comment
    ST3GAL3 100.00 0 No comment
    ST3GAL5 93.40 0 No comment
    STAG1 99.98 0 No comment
    STX1B 99.89 0 No comment
    STXBP1 100.00 0 No comment
    SYN1 75.34 0 No comment
    SYNGAP1 98.18 0 No comment
    SYNJ1 99.27 0 No comment
    SZT2 99.94 0 No comment
    TANC2 100.00 0 No comment
    TBC1D24 99.73 0 No comment
    TBCD 96.99 0 No comment
    TCF4 99.90 0 No comment
    TK2 85.99 0 No comment
    ACD 99.86 0 No comment
    TRAK1 99.99 0 No comment
    TRAPPC6B 100.00 0 No comment
    TREX1 100.00 0 No comment
    TRIT1 99.98 0 No comment
    TSC1 99.97 0 No comment
    TSC2 99.99 0 No comment
    TUBA1A 100.00 0 No comment
    TUBB2B 100.00 0 No comment
    UBA5 99.97 0 No comment
    UBE3A 99.97 0 No comment
    UFC1 99.91 0 No comment
    UGDH 99.96 0 No comment
    VARS1 100.00 0 No comment
    VARS2 100.00 0 No comment
    WDR26 99.78 0 No comment
    WDR45 99.67 0 No comment
    WWOX 100.00 0 No comment
    YWHAG 100.00 0 No comment
    ZBTB18 99.11 0 No comment
    ZEB2 99.91 0 No comment
    ZNHIT3 74.73 0 No comment