- Laboratories
- Centre de Génétique Humaine - CHU Sart-Tilman
Centre de Génétique Humaine - CHU Sart-Tilman
Name of the laboratory: |
Centre de Génétique Humaine - CHU Sart-Tilman
|
Abbreviation: |
CHULg
|
RIZIV number: |
86299019-996
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Address: |
Domaine Universitaire du Sart Tilman, Bâtiment B 35 |
Telephone: | |
Fax: | |
E-mail: |
genetique.humaine@chuliege.be
|
URL: |
|
EQA: |
2016
DNA Sequencing – NGS (vGermline)
EMQN
2019
DNA Sequencing – NGS (vGermline)
EMQN
2020
DNA Sequencing – NGS (vGermline)
EMQN
2021
DNA Sequencing – NGS (vGermline)
EMQN
2022
DNA Sequencing – NGS (vGermline)
EMQN
2015
Somatic NGS mutation testing
EMQN
2016
Somatic NGS mutation testing
EMQN
2017
Somatic NGS mutation testing
EMQN
2015
DNA Sequencing - Sanger
EMQN
2016
DNA Sequencing - Sanger
EMQN
2017
DNA Sequencing - Sanger
EMQN
2019
DNA Sequencing - Sanger
EMQN
2020
DNA Sequencing - Sanger
EMQN
2021
DNA Sequencing - Sanger
EMQN
2022
DNA Sequencing - Sanger
EMQN
2015
Blood -postnatal
GenQA (Genomics Quality Assessment)
2016
Blood -postnatal
GenQA (Genomics Quality Assessment)
2017
Blood -postnatal
GenQA (Genomics Quality Assessment)
2018
Blood -postnatal
GenQA (Genomics Quality Assessment)
2020
Blood postnatal
GenQA (Genomics Quality Assessment)
2021
Recurrent miscarriage karyotyping
GenQA (Genomics Quality Assessment)
2021
Sex chromosome disorders karyotyping
GenQA (Genomics Quality Assessment)
2022
Postnatal karyotyping
GenQA (Genomics Quality Assessment)
2021
Maternal cell contamination and fetal sexing
GenQA (Genomics Quality Assessment)
2022
Chromosome breakage syndrome
GenQA (Genomics Quality Assessment)
2022
Pregnancy loss
GenQA (Genomics Quality Assessment)
2016
Postnatal constitutional CNV detection (array)
GenQA (Genomics Quality Assessment)
2018
Postnatal constitutional CNV detection (array)
GenQA (Genomics Quality Assessment)
2019
Postnatal constitutional CNV detection (array)
GenQA (Genomics Quality Assessment)
2021
Postnatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2022
Postnatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2015
Prenatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2016
Prenatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2017
Prenatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2018
Prenatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2019
Prenatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2021
Prenatal constitutional CNV detection
GenQA (Genomics Quality Assessment)
2022
NIPT for common aneuploidies
GenQA (Genomics Quality Assessment)
2021
Pathogenicity of germline sequence variant
GenQA (Genomics Quality Assessment)
2022
Rapid prenatal testing for common aneuploidies
GenQA (Genomics Quality Assessment)
2022
infertility
GenQA (Genomics Quality Assessment)
|
Created: |
15 May 2018 - 11:40
|
Changed: |
14 Jul 2023 - 09:47
|
- Abacavir toxicity (HLA-B*57:01 genotyping) - Pharmacogenetics
- Achondroplasia (hot spot mutation - p.Gly380Arg)
- Adrenoleukodystrophy (X-linked)
- Alpha-1-antitrypsin deficiency (hot spot mutations - p.Glu342Lys (allele PI-Z), p. Glu264Val (allele PI-S))
- Alzheimer Disease, late onset (AD2) / ApoE2, E3, and E4 isoforms
- Angelman / Prader Willi Syndrome
- Azoo-/oligozoospermia (microdeletion of 3 regions of Y-chromosome AZFa, b and c)
- Becker muscular dystrophy / Duchenne muscular dystrophy (deletion/duplication DMD gene)
- Beta-globin hemoglobinopathies (Hot-spot mutations : Sickle cell disease (HBS), hemoglobin C, hemoglobin E or Hemoglobin D)
- Beta-globin hemoglobinopathies (full sequencing)
- Cardiofaciocutaneous syndrome (5 genes)
- Central Precocious Puberty (5 genes)
- Cerebral folate transport deficiency (2 genes)
- Charcot-Marie-Tooth type 1A / Hereditary Neuropathy with Liability to Pressure Palsies
- Cholestasis (1 gene among ATP8B1, ABCB11,ABCB4)
- Cholestasis (2 genes among ATP8B1, ABCB11, ABCB4)
- Congenital Neutropenia
- Congenital or familial erythrocytosis (ECYT 1-5; EPOR, VHL, EGLN1, EPAS1, EPO)
- Costello Syndrome- Schimmelpenning syndrome
- Cowden disease (PTEN gene)
- Craniosynostosis / Apert syndrome (hot spot mutations - exon 7)
- Craniosynostosis / Crouzon syndrome (hot spot mutation - exon 9)
- Craniosynostosis / Muenke syndrome (hot spot mutation - p.Pro250Arg)
- Creatine deficiency by Guanidinoacetate methyltransferase deficiency (2 genes)
- Cystic Fibrosis / related disorder (Full sequencing)
- Cystic Fibrosis / related disorders (50 hot spot mutations)
- Cystic Fibrosis and related disorders (TG repeat intron 8)
- Diffuse gastric cancer (CDH1 gene)
- Dihydropyrimidine dehydrogenase deficiency (5-fluorouracil (5-FU) toxicity) - Pharmacogenetics
- Early-onset severe obesity
- Erythocyoses, polycythémies, thrombocytoses congénitales (gene panel)
- Factor V- cambridge, liverpool and hong kong variant (hot spot mutations - p.Arg334Thr, p.Arg306)
- Familial Hypomagnesemia with Hypercalciuria and Nephrocalcinosis
- Familial Mediterranean Fever
- Fragile X syndrome and fragile X-associated disorders (FXTAS, FXPOI)
- Friedreich ataxia - GAA repeat expansion
- Germline analysis of BRCA1/2 for iPARP treatment
- Gilbert disease / Irinotecan sensitivity / Raltegravir toxicity - Pharmacogenetics
- Glycogen storage disease type 0
- Glycogen storage disease type 1a
- Glycogen storage disease type 9
- Hemochromatosis hereditary type 1 (HFE gene - hot spot mutations - p.Cys282Tyr; p.His63Asp)
- Hemochromatosis hereditary type 4 (SLC40A1 gene)
- Hemochromatosis, juvenile (HJV and HAMP genes)
- Hereditary Breast and Ovarian Cancer, HBOC (13 genes)
- Hereditary Melanoma Panel (7 genes)
- Hereditary Polyposis Panel (11 genes) - ULG
- Hereditary angioedema type III (F12 gene - hot spot mutations - p.Thr328Lys; p. Thr328Arg)
- Hereditary cancer (Breast, ovary, colon) (26 genes)
- Hereditary nonpolyposis colorectal cancer / Lynch syndrome (8 genes)
- Homocystinuria (hot spot mutation - c.1298A>C)
- Homocystinuria (hot spot mutation - c.677C>T)
- Huntington disease - CAG repeat expansion
- Hypercholesterolemia, Familial (9 genes)
- Hyperekplexia (3 genes)
- Hypocalciuric hypercalcemia, familial type I or Hypocalcemia or Hyperparathyroidism, familial isolated (CASR gene)
- Hypocalciuric hypercalcemia, familial type II
- Hypocalciuric hypercalcemia, familial type III
- Hypochondroplasia (Hotspot mutation p.(Asn540Lys))
- Hypogonadism. Male Infertility (LHB gene)
- Hypoparathyroidism sensorineural deafness and renal disease
- Inherited Kidney Diseases (Gene Panel)
- Intellectual disability (gene panel)
- Kallmann syndrome
- Kallmann syndrome / Hypogonadotropic Hypogonadism
- Leri-Weill dyschondrosteosis / ISS
- Li-Fraumeni Syndrome (TP53 gene)
- Lynch syndrome - MLH1 promoter hypermethylation and BRAF V600E mutation
- Lynch-like syndrome
- Mc Ardle disease, glycogene storage disease type V
- Medium-Chain Acyl-CoA Dehydrogenase deficiency (MCAD-ACADM gene - point mutation c.985A>G )
- Microsatellites instability analysis- MMR genes
- Movement Disorders (gene panel)
- Multiple Endocrine Neoplasia type 2A and 2B / Familial medullary thyroid carcinoma
- Myeloid neoplasms with germline predisposition (Hereditary MDS/Acute Leukemia) (gene panel)
- Myeloid/lymphoid neoplasms with germline predisposition
- Nephrotic syndrome - steroid resistant
- Obesitas, Monogenic early onset
- Pancreatitis idiopathic (PRSS1 gene)
- Pancreatitis, hereditary (7 genes)
- Paraganglioma-pheochromocytoma (6 genes) - ULG
- Peutz-Jeghers Syndrome (STK11 gene)
- Pituitary adenoma (4 genes)
- Primary familial erythrocytosis or Primary familial congenital polycythemia
- Prostate cancer susceptibility (HOXB13 - hot spot mutation p.(Gly84Glu))
- Recessive nonsyndromic hearing loss and deafness (2 genes)
- Renal cysts and diabetes syndrome / Maturity onset Diabete of the Young (MODY), type 5
- Rett syndrome
- Rokitansky syndrome
- Sessile serrated polyposis syndrome (RNF43 gene)
- Sex determining region (absence/presence)
- Sex determining region Y
- Somatic analysis of the BRCA genes in the context of ovarian cancer treatment (BRCA1; BRCA2 genes)
- Spinal muscular atrophy (SMA) type 1 (Werdnig-Hoffmann), type 2, type 3 (Kugelberg-Welander) and type 4
- Spinal muscular atrophy (SMA) type 1 (Werdnig-Hoffmann), type 2, type 3 (Kugelberg-Welander) and type 4 (Full sequencing)
- Steinert myotonic dystrophy - CTG repeat expansion
- Susceptibility to Cutaneous Malignant Melanoma
- Susceptibility to pancreatitis induced by thiopurine immunosuppressants
- Thiopurine S-Methyltransferase deficiency - TPMT genotyping - TPMT*2/ TPMT*3A/3B/3C - Pharmacogenetics
- X-linked creatine deficiency
- Zygosity (medical)
- congenital or familial thrombocytosis (TCYTH1-2; THPO, MPL)
- filaggrin gene
- « Inherited bone marrow failures syndromes » with or without organ dysfunction
- Alzheimer disease (NON RARE IN EUROPE)
- 45,X/46,XY mixed gonadal dysgenesis
- 46,XX ovotesticular disorder of sex development
- 46,XX testicular disorder of sex development
- 46,XY complete gonadal dysgenesis
- 46,XY partial gonadal dysgenesis
- 5-fluorouracil toxicity
- APC-related attenuated familial adenomatous polyposis
- Abacavir toxicity
- Abdominal obesity-metabolic syndrome 3
- Achondroplasia
- Acquired idiopathic sideroblastic anemia
- Acromegaly
- Acute myeloid leukaemia with myelodysplasia-related features
- Acute myeloid leukemia with t(8;21)(q22;q22) translocation
- Aggressive systemic mastocytosis
- Alpha-1-antitrypsin deficiency
- Alström syndrome
- Angelman syndrome due to imprinting defect in 15q11-q13
- Angelman syndrome due to maternal 15q11q13 deletion
- Angelman syndrome due to paternal uniparental disomy of chromosome 15
- Apert syndrome
- Ataxia-telangiectasia
- Ataxia-telangiectasia-like disorder
- Atypical Rett syndrome
- Atypical chronic myeloid leukemia
- Autosomal dominant aplasia and myelodysplasia
- Autosomal dominant hypocalcemia
- Autosomal dominant non-syndromic intellectual disability
- Autosomal dominant secondary polycythemia
- Autosomal dominant severe congenital neutropenia
- Autosomal recessive non-syndromic sensorineural deafness type DFNB
- Autosomal recessive severe congenital neutropenia due to CSF3R deficiency
- Autosomal recessive severe congenital neutropenia due to G6PC3 deficiency
- Autosomal thrombocytopenia with normal platelets
- Azathioprine or 6-mercatopurine toxicity or dose selection
- B-cell chronic lymphocytic leukemia
- B-lymphoblastic leukemia/lymphoma with recurrent genetic abnormality
- BAP1-related tumor predisposition syndrome
- Bardet-Biedl syndrome
- Becker muscular dystrophy
- Beta-thalassemia intermedia
- Beta-thalassemia major
- Bloom syndrome
- Borjeson-Forssman-Lehmann syndrome
- Cardiofaciocutaneous syndrome
- Carney complex
- Carpenter syndrome
- Charcot-Marie-Tooth disease type 1A
- Cholesteryl ester storage disease
- Chronic myeloid leukemia
- Chronic neutrophilic leukemia
- Congenital amegakaryocytic thrombocytopenia
- Congenital bilateral absence of vas deferens
- Congenital central hypoventilation syndrome
- Congenital factor V deficiency
- Constitutional mismatch repair deficiency syndrome
- Costello syndrome
- Cowden syndrome
- Crouzon syndrome
- Cushing syndrome due to macronodular adrenal hyperplasia
- Cyclic neutropenia
- Cystic fibrosis
- DDX41-related hematologic malignancy predisposition syndrome
- DERMATITIS, ATOPIC
- Deafness-lymphedema-leukemia syndrome
- Delta-beta-thalassemia
- Dihydropyrimidine dehydrogenase deficiency
- Dominant beta-thalassemia
- Duchenne muscular dystrophy
- Essential thrombocythemia
- F12-related hereditary angioedema with normal C1Inh
- Familial Mediterranean fever
- Familial adenomatous polyposis
- Familial adenomatous polyposis due to 5q22.2 microdeletion
- Familial atypical multiple mole melanoma syndrome
- Familial hypocalciuric hypercalcemia type 1
- Familial hypocalciuric hypercalcemia type 2
- Familial hypocalciuric hypercalcemia type 3
- Familial idiopathic steroid-resistant nephrotic syndrome with focal segmental hyalinosis
- Familial isolated pituitary adenoma
- Familial melanoma
- Familial pancreatic carcinoma
- Familial platelet disorder with associated myeloid malignancy
- Familial prostate cancer
- Familial thrombocytosis
- Fanconi anemia
- Fragile X syndrome
- Fragile X-associated tremor/ataxia syndrome
- Friedreich ataxia
- Gardner syndrome
- Gastric adenocarcinoma and proximal polyposis of the stomach
- Generalized juvenile polyposis/juvenile polyposis coli
- Gilbert syndrome (NON RARE IN EUROPE)
- Glycogen storage disease due to glucose-6-phosphatase deficiency type Ia
- Glycogen storage disease due to hepatic glycogen synthase deficiency
- Glycogen storage disease due to liver phosphorylase kinase deficiency
- Glycogen storage disease due to muscle glycogen phosphorylase deficiency
- Guanidinoacetate methyltransferase deficiency
- HNF1B-related autosomal dominant tubulointerstitial kidney disease
- Hemochromatosis type 1 (NON RARE IN EUROPE)
- Hemochromatosis type 2
- Hemochromatosis type 4
- Hemoglobin C disease
- Hemoglobin D disease
- Hemoglobin E disease
- Hemoglobin M disease
- Hereditary breast and ovarian cancer syndrome
- Hereditary breast cancer
- Hereditary chronic pancreatitis
- Hereditary diffuse gastric cancer
- Hereditary hyperekplexia
- Hereditary mixed polyposis syndrome
- Hereditary neuropathy with liability to pressure palsies
- Hereditary neutrophilia
- Hereditary nonpolyposis colorectal cancer
- Hereditary pheochromocytoma-paraganglioma
- Hereditary site-specific ovarian cancer syndrome
- Heterozygous familial hypercholesterolemia (NON RARE IN EUROPE)
- Homocystinuria due to methylene tetrahydrofolate reductase deficiency
- Homozygous familial hypercholesterolemia
- Huntington disease
- Hypochondroplasia
- Hypoparathyroidism-sensorineural deafness-renal disease syndrome
- Idiopathic aplastic anemia
- Idiopathic bronchiectasis
- Idiopathic central precocious puberty
- Infantile spasms syndrome
- Inherited acute myeloid leukemia
- Inherited cancer-predisposing syndrome due to biallelic BRCA2 mutations
- Intrahepatic cholestasis of pregnancy
- Irinotecan toxicity
- Joubert syndrome
- Joubert syndrome with hepatic defect
- Joubert syndrome with ocular defect
- Joubert syndrome with oculorenal defect
- Juvenile polyposis of infancy
- Kallmann syndrome
- Kostmann syndrome
- L-Arginine:glycine amidinotransferase deficiency
- Leydig cell hypoplasia due to LHB deficiency
- Li-Fraumeni syndrome
- Lynch syndrome
- Léri-Weill dyschondrosteosis
- MAGEL2-related Prader-Willi-like syndrome
- MIRAGE syndrome
- MITF-related melanoma and renal cell carcinoma predisposition syndrome
- MSH3-related attenuated familial adenomatous polyposis
- MUTYH-related attenuated familial adenomatous polyposis
- Mayer-Rokitansky-Küster-Hauser syndrome type 1
- Meckel syndrome
- Medium chain acyl-CoA dehydrogenase deficiency
- Melanoma and neural system tumor syndrome
- Monocytopenia with susceptibility to infections
- Muenke syndrome
- Muir-Torre syndrome
- Multiple endocrine neoplasia type 1
- Multiple endocrine neoplasia type 2A
- Multiple endocrine neoplasia type 2B
- Multiple endocrine neoplasia type 4
- NON RARE IN EUROPE: Autosomal dominant ichthyosis vulgaris
- NON RARE IN EUROPE: Recurrent acute pancreatitis
- NTHL1-related attenuated familial adenomatous polyposis
- Neonatal severe primary hyperparathyroidism
- Neurodegenerative syndrome due to cerebral folate transport deficiency
- Nijmegen breakage syndrome
- Nijmegen breakage syndrome-like disorder
- Non-specific syndromic intellectual disability
- Normosmic congenital hypogonadotropic hypogonadism
- Null pituitary adenoma
- Obesity due to SIM1 deficiency
- Obesity due to congenital leptin deficiency
- Obesity due to leptin receptor gene deficiency
- Obesity due to melanocortin 4 receptor deficiency
- Obesity due to pro-opiomelanocortin deficiency
- Obesity due to prohormone convertase I deficiency
- Pancytopenia-developmental delay syndrome
- Partial chromosome Y deletion
- Peutz-Jeghers syndrome
- Polycythemia vera
- Polymerase proofreading-related adenomatous polyposis
- Prader-Willi syndrome due to imprinting mutation
- Prader-Willi syndrome due to maternal uniparental disomy of chromosome 15
- Prader-Willi syndrome due to paternal deletion of 15q11q13 type 2
- Precursor B-cell acute lymphoblastic leukemia
- Primary familial polycythemia
- Primary hypereosinophilic syndrome
- Primary hypomagnesemia with hypercalciuria and nephrocalcinosis without severe ocular involvement
- Primary myelofibrosis
- Progressive familial intrahepatic cholestasis type 1
- Progressive familial intrahepatic cholestasis type 2
- Progressive familial intrahepatic cholestasis type 3
- Prolactinoma
- Proximal spinal muscular atrophy type 1
- Proximal spinal muscular atrophy type 2
- Proximal spinal muscular atrophy type 3
- Proximal spinal muscular atrophy type 4
- RAS-associated autoimmune leukoproliferative disease
- Refractory anemia
- Refractory anemia with excess blasts type 1
- Refractory anemia with excess blasts type 2
- Rett syndrome
- Rubinstein-Taybi syndrome due to 16p13.3 microdeletion
- Rubinstein-Taybi syndrome due to CREBBP mutations
- Rubinstein-Taybi syndrome due to EP300 haploinsufficiency
- SHOX-related short stature
- Selection of therapeutic option in colorectal cancer
- Senior-Loken syndrome
- Serrated polyposis syndrome
- Severe early-onset obesity-insulin resistance syndrome due to SH2B1 deficiency
- Shwachman-Diamond syndrome
- Sickle cell anemia
- Sickle cell-beta-thalassemia disease syndrome
- Sickle cell-hemoglobin D disease syndrome
- Sickle cell-hemoglobin E disease syndrome
- Silent pituitary adenoma
- Sitosterolemia
- Sotos syndrome
- Steinert myotonic dystrophy
- Symptomatic form of fragile X syndrome in female carriers
- Symptomatic form of hemochromatosis type 1
- Symptomatic form of muscular dystrophy of Duchenne and Becker in female carriers
- Thrombocythemia with distal limb defects
- Turcot syndrome with polyposis
- Ulnar-mammary syndrome
- Von Hippel-Lindau disease
- WAGR syndrome
- Wiskott-Aldrich syndrome
- X-linked cerebral adrenoleukodystrophy
- X-linked creatine transporter deficiency
- X-linked severe congenital neutropenia
-
Breast cancer, hereditary (13 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments BRCA1 100.00 1 CNV assessed by MLPA BRCA2 100.00 1 CNV assessed by MLPA TP53 100.00 1 CNV assessed by MLPA (on demand) PALB2 100.00 0 CHEK2 100.00 0 BARD1 100.00 0 ATM 100.00 0 MLH1 100.00 1 CNV assessed by MLPA (on demand) MSH2 100.00 1 CNV assessed by MLPA (on demand) MSH6 100.00 1 CNV assessed by MLPA (on demand) BRIP1 100.00 0 RAD51C 100.00 0 RAD51D 100.00 0 -
Cancer (Breast, ovary, colon,…) (26 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ABRAXAS1 ATM BARD1 BRCA1 BRCA2 BLM BRIP1 CDH1 CHEK2 EPCAM MEN1 MLH1 MRE11 MSH2 MSH6 MUTYH NBN PALB2 PMS2 PTEN RAD50 RAD51C RAD51D STK11 TP53 XRCC2 -
Central Precocious Puberty (5 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments MKRN3 100.00 0 KISS1 100.00 0 KISS1R 100.00 0 PROKR2 100.00 0 DLK1 100.00 0 -
Cerebral folate transport deficiency (2 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments FOLR1 FOLR2 -
Congenital or familial erythrocytosis (5 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments JAK2 0.00 0 EPO 0.00 0 EPOR 0.00 0 VHL 0.00 0 EPAS1 0.00 0 EGLN1 0.00 0 -
Early-onset severe obesity (44 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ADCY3 100.00 0 only for coding exons and intronic borders +/-14pb ALMS1 100.00 0 only for coding exons and intronic borders +/-14pb BBS1 100.00 0 only for coding exons and intronic borders +/-14pb BBS2 100.00 0 only for coding exons and intronic borders +/-14pb ARL6 100.00 0 only for coding exons and intronic borders +/-14pb BBS4 100.00 0 only for coding exons and intronic borders +/-14pb BBS5 100.00 0 only for coding exons and intronic borders +/-14pb MKKS 100.00 0 only for coding exons and intronic borders +/-14pb BBS7 100.00 0 only for coding exons and intronic borders +/-14pb TTC8 100.00 0 only for coding exons and intronic borders +/-14pb BBS9 99.99 0 only for coding exons and intronic borders +/-14pb BBS10 100.00 0 only for coding exons and intronic borders +/-14pb TRIM32 100.00 0 only for coding exons and intronic borders +/-14pb BBS12 100.00 0 only for coding exons and intronic borders +/-14pb MKS1 100.00 0 only for coding exons and intronic borders +/-14pb CEP290 99.99 0 only for coding exons and intronic borders +/-14pb WDPCP 100.00 0 only for coding exons and intronic borders +/-14pb SDCCAG8 100.00 0 only for coding exons and intronic borders +/-14pb LZTFL1 100.00 0 only for coding exons and intronic borders +/-14pb BBIP1 100.00 0 only for coding exons and intronic borders +/-14pb IFT27 100.00 0 only for coding exons and intronic borders +/-14pb BDNF 100.00 0 only for coding exons and intronic borders +/-14pb CREBBP 99.99 0 only for coding exons and intronic borders +/-14pb EP300 99.99 0 only for coding exons and intronic borders +/-14pb GNAS 99.34 0 only for coding exons and intronic borders +/-14pb INPP5E 97.02 0 only for coding exons and intronic borders +/-14pb LEP 100.00 1 only for coding exons and intronic borders +/-14pb LEPR 99.99 1 only for coding exons and intronic borders +/-14pb MAGEL2 99.54 0 only for coding exons and intronic borders +/-14pb MC3R 100.00 1 only for coding exons and intronic borders +/-14pb MC4R 100.00 1 only for coding exons and intronic borders +/-14pb MYT1L 100.00 0 only for coding exons and intronic borders +/-14pb NTRK2 100.00 0 only for coding exons and intronic borders +/-14pb PCSK1 99.99 0 only for coding exons and intronic borders +/-14pb PHF6 99.98 0 only for coding exons and intronic borders +/-14pb POMC 99.97 1 only for coding exons and intronic borders +/-14pb RAB23 100.00 0 only for coding exons and intronic borders +/-14pb SETD2 100.00 0 only for coding exons and intronic borders +/-14pb SH2B1 100.00 1 only for coding exons and intronic borders +/-14pb SIM1 100.00 1 only for coding exons and intronic borders +/-14pb TBX3 98.58 0 only for coding exons and intronic borders +/-14pb TUB 100.00 0 only for coding exons and intronic borders +/-14pb DYRK1B 99.94 0 only for coding exons and intronic borders +/-14pb MRAP2 100.00 0 only for coding exons and intronic borders +/-14pb -
Erythocyoses, polycythémies, thrombocytoses congénitales (gene panel) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ANKRD26 0.00 0 BPGM 0.00 0 CSF1R 0.00 0 CSF3R 0.00 0 DDX41 0.00 0 EGLN1 0.00 0 ELANE 0.00 0 EPAS1 0.00 0 EPO 0.00 0 EPOR 0.00 0 GATA2 0.00 0 JAK1 0.00 0 JAK2 0.00 0 JAK3 0.00 0 MPL 0.00 0 PIEZO1 0.00 0 SLC30A10 0.00 0 STAT3 0.00 0 STAT5B 0.00 0 THPO 0.00 0 VHL 0.00 0 SH2B3 0.00 0 -
Familial Hypercholesterolemia panel (9 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments LDLR 100.00 1 only for 5'UTR + coding exons + intronic borders +/-14pb APOB 99.79 0 only for coding exons and intronic borders +/-14pb Exons 26 and 29 are entirely covered at 30x Exon 1 is not covered APOE 100.00 0 only for coding exons and intronic borders +/-14pb PCSK9 100.00 0 only for coding exons and intronic borders +/-14pb LDLRAP1 98.69 0 only for coding exons and intronic borders +/-14pb exon 1 is not covered LIPA 100.00 0 only for coding exons and intronic borders +/-14pb ABCG5 100.00 0 only for coding exons and intronic borders +/-14pb ABCG8 100.00 0 only for coding exons and intronic borders +/-14pb STAP1 100.00 0 only for coding exons and intronic borders +/-14pb -
Germline analysis of BRCA1/2 for iPARP treatment
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments BRCA1 100.00 1 BRCA2 100.00 1 -
Hematologic Familiar Forms - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments RPS7 88.11 0 No CHEK2 80.48 0 No PTPN11 95.76 0 No KRAS 96.88 0 No RPS10 98.48 0 No FANCM 97.86 0 No RPL35A 98.16 0 No RPS24 98.39 0 No ANKRD26 100.00 0 Genomic start 27389256 to genomic end 27389427 UTR position RPL5 96.83 0 No SHQ1 97.53 0 No RPS26 98.64 0 No SRP72 97.98 0 No FANCL 98.99 0 No EGLN1 98.71 0 No JAK2 97.81 0 No DNAJC21 98.55 0 No NF1 96.15 0 No BLM 98.77 0 No SBF2 99.19 0 No MSH2 98.36 0 No ATM 98.90 0 No ERCC4 98.33 0 No RPL11 99.02 0 No NBN 99.57 0 No PMS2 98.87 0 No ATG2B 99.33 0 No BRCA2 99.11 0 No ERCC6L2 99.48 0 No ATR 99.19 0 No VPS45 99.60 0 No SRP54 99.44 0 No SBDS 96.51 0 No UBE2T 98.01 0 No RBM8A 99.34 0 No RAD51C 99.83 0 No FANCC 99.72 0 No FANCD2 99.00 0 No BRIP1 99.61 0 No BRCA1 99.80 0 No CEBPA 99.48 0 No PARN 99.84 0 No MSH6 99.84 0 No MECOM 99.83 0 No PALB2 99.80 0 No FANCE 97.83 0 No PAX5 99.72 0 No RAD51 99.94 0 No ATRX 99.85 0 No FANCB 99.61 0 No FANCI 99.66 0 No STN1 99.75 0 No NHP2 99.79 0 No MLH1 99.86 0 No TERT 100.00 0 Genomic start 1295105 to genomic end 1295162 UTR position XRCC2 99.97 0 No FANCA 99.93 0 No EPAS1 99.62 0 No TET2 99.97 0 No HAX1 99.98 0 No SLX4 99.98 0 No CBL 99.87 0 No WAS 99.90 0 No USB1 100.00 0 No EPO 99.99 0 No VHL 99.98 0 No MAD2L2 100.00 0 No RUNX1 99.94 0 No CTC1 99.99 0 No GSKIP 99.99 0 No DKC1 100.00 0 Genomic start 153991031 to genomic end 153991240 UTR position SAMD9L 99.96 0 No MPL 99.99 0 No ETV6 100.00 0 No LIG4 99.98 0 No NOP10 99.99 0 No G6PC3 100.00 0 No CSF3R 100.00 0 No SAMD9 100.00 0 No ELANE 100.00 0 No GATA2 100.00 0 No RPS19 100.00 0 No GFI1 100.00 0 No FANCF 100.00 0 No TPP1 99.99 0 No FANCG 100.00 0 No WRAP53 100.00 0 No TP53 100.00 0 No TINF2 100.00 0 No EPOR 100.00 0 No DDX41 100.00 0 No THPO 100.00 0 No TERC 100.00 0 Genomic start 169482849 to genomic end 169483098 UTR position RTEL1 100.00 0 Genomic start 62326911 to genomic end 62326911 and genomic start 62326900 to genomic end 62326928 and genomic start 62326958 to genomic end 62326986 intronic positions and 99.98 for CDS -
Hereditary Melanoma Panel (7 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments CDKN2A 100.00 0 CDK4 100.00 0 POT1 100.00 0 TERT 100.00 0 TERF2IP 100.00 0 BAP1 100.00 0 MITF 100.00 0 -
Hereditary Myelodysplastic /Acute Leukemia Predisposition Syndromes (gene panel)
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments CEBPA 100.00 0 Exon 1 ETV6 100.00 0 Exons 1-6 GATA1 100.00 0 Exons 2-6 GATA2 100.00 0 Exons 2-6 JAK2 100.00 0 Exons 12 and 14 MPL 100.00 0 Exon 10 RUNX1 100.00 0 Exons 1-6 ANKRD26 100.00 0 5’UTR CSF3R 100.00 0 exons 14 and17 DDX41 100.00 0 exons 3 ;5 ;6 ;8 ;10 ;11 ;15 SRP72 100.00 0 exons 4 and10 STAT3 100.00 0 exons 19-24 TERT 100.00 0 exons 2-9 TERC 100.00 0 exon 1 TP53 100.00 0 exons 2-11 -
Hereditary Polyposis Panel (11 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments APC 100.00 1 CNV assessed by MLPA MUTYH 100.00 1 CNV assessed by MLPA (Probes for Exons 1, 2, 11, 16 in the SALSA MLPA P043 APC kit) BMPR1A 100.00 0 NTHL1 100.00 0 SMAD4 100.00 0 MSH3 100.00 0 POLE 100.00 0 POLD1 100.00 0 PTEN 100.00 1 CNV assessed by MLPA (on demand) STK11 100.00 0 GREM1 100.00 1 CNV assessed by MLPA (Probes for the upstream region in the SALSA MLPA P043 APC kit) -
Hereditay Non Polyposis Colorectal Cancer (8 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments MLH1 100.00 1 CNV assessed by MLPA MSH2 100.00 1 CNV assessed by MLPA MSH6 100.00 1 CNV assessed by MLPA EPCAM 100.00 0 TP53 100.00 1 CNV assessed by MLPA MUTYH 100.00 1 CNV assessed by MLPA (on demand) POLE 100.00 0 POLD1 100.00 0 -
Hyperekplexia (3 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments SLC6A5 GLRB GLRA1 -
Intellectual disability/Epilepsy (1091 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments A2ML1 99.35 0 Vissers et al., EJHG 2015 : Noonan syndrome ABCC9 99.41 0 Hypertrichotic osteochondrodysplasia ABCD1 99.49 0 Adrenoleukodystrophy ABHD5 98.48 0 Chanarin-Dorfman syndrome ACAD9 99.57 0 Mitochondrial complex I deficiency due to ACAD9 deficiency ACO2 99.66 0 Infantile cerebellar-retinal degeneration ACOX1 99.49 0 Peroxisomal acyl-CoA oxidase deficiency ACSL4 91.09 0 Mental retardation, X-linked 63 ACTB 99.34 0 Baraitser-Winter syndrome 1 ACTG1 99.69 0 Baraitser-Winter syndrome 2 ACY1 99.67 0 Aminoacylase 1 deficiency ADAR 99.45 0 Aicardi-Goutieres syndrome 6 ADAT3 81.40 0 Mental retardation, autosomal recessive 36 ADGRG1 99.67 0 Polymicrogyria, bilateral frontoparietal ADK 98.74 0 Hypermethioninemia due to adenosine kinase deficiency ADNP 99.55 0 Helsmoortel-van der Aa syndrome ADSL 99.58 0 Adenylosuccinase deficiency AFF2 90.80 0 Mental retardation, X-linked, FRAXE type AGA 99.60 0 Aspartylglucosaminuria AGPAT2 91.26 0 Lipodystrophy, congenital generalized, type 1 AHCY 99.67 0 Hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase AHDC1 99.68 0 Xia-Gibbs syndrome AHI1 99.05 0 Joubert syndrome 3 AIMP1 96.88 0 Leukodystrophy, hypomyelinating, 3 AKT3 98.82 0 Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2 ALDH18A1 99.66 0 Cutis laxa, autosomal recessive, type IIIA ALDH3A2 99.31 0 Sjogren-Larsson syndrome ALDH4A1 96.44 0 Hyperprolinemia, type II ALDH5A1 93.04 0 Succinic semialdehyde dehydrogenase deficiency ALDH7A1 99.00 0 Epilepsy, pyridoxine-dependent ALG1 99.43 0 Congenital disorder of glycosylation, type Ik ALG11 99.57 0 Congenital disorder of glycosylation, type Ip ALG12 99.69 0 Congenital disorder of glycosylation, type Ig ALG13 92.88 0 Epileptic encephalopathy, early infantile, 36 ALG2 97.14 0 Myasthenic syndrome, congenital, 14, with tubular aggregates ALG3 99.59 0 Congenital disorder of glycosylation, type Id ALG6 98.36 0 Congenital disorder of glycosylation, type Ic ALG9 96.33 0 Gillessen-Kaesbach-Nishimura syndrome ALMS1 98.27 0 Alstrom syndrome ALX1 99.52 0 Frontonasal dysplasia 3 ALX4 99.07 0 Frontonasal dysplasia 2 AMER1 99.96 0 Osteopathia striata with cranial sclerosis AMPD2 99.69 0 Pontocerebellar hypoplasia, type 9 AMT 99.69 0 Glycine encephalopathy ANK3 99.47 0 Mental retardation, autosomal recessive, 37 ANKH 99.64 0 Craniometaphyseal dysplasia ANKRD11 99.68 0 KBG syndrome AP1S1 99.50 0 MEDNIK syndrome AP1S2 88.78 0 Mental retardation, X-linked syndromic 5 AP4B1 99.61 0 Spastic paraplegia 47, autosomal recessive AP4M1 99.68 0 Spastic paraplegia 50, autosomal recessive AP4S1 99.48 0 Spastic paraplegia 52, autosomal recessive APTX 99.02 0 Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia ARCN1 99.27 0 Short stature, rhizomelic, with microcephaly, micrognathia, and developmental delay ARFGEF2 99.31 0 Periventricular heterotopia with microcephaly ARG1 99.53 0 Argininemia ARHGAP31 99.60 0 Adams-Oliver syndrome 1 ARHGEF2 99.64 0 Neurodevelopmental disorder with midbrain and hindbrain malformations ARHGEF9 97.26 0 Epileptic encephalopathy, early infantile, 8 ARID1A 97.02 0 Coffin-Siris syndrome 2 ARID1B 97.57 0 Coffin-Siris syndrome 1 ARID2 99.33 0 Coffis-Siris syndrome 6 ARL13B 98.36 0 Joubert syndrome 8 ARL6 99.09 0 Bardet-Biedl syndrome 3 ARSL 90.38 0 Chondrodysplasia punctata, X-linked recessive ARX 65.25 0 Mental retardation, X-linked 29 and others ASH1L 99.53 0 Okamoto et al., AJMG 2017 : MCA/ID syndrome ASNS 99.42 0 Asparagine synthetase deficiency ASPA 99.17 0 Canavan disease ASPM 98.50 0 Microcephaly 5, primary, autosomal recessive ASXL1 95.03 0 Bohring-Opitz syndrome ASXL3 98.20 0 Bainbridge-Ropers syndrome ATIC 96.73 0 AICA-ribosiduria due to ATIC deficiency ATP6V0A2 99.12 0 Cutis laxa, autosomal recessive, type IIA ATP7A 94.32 0 Menkes disease ATR 99.17 0 Seckel syndrome 1 ATRIP 95.19 0 Ogi et al., PLoS Genet 2012 : Seckel syndrome ATRX 92.10 0 Mental retardation-hypotonic facies syndrome, X-linked AUH 96.75 0 3-methylglutaconic aciduria, type I AUTS2 97.55 0 Mental retardation, autosomal dominant 26 B3GLCT 92.21 0 Peters-plus syndrome B4GALT1 98.41 0 Congenital disorder of glycosylation, type IId B4GALT7 83.36 0 Ehlers-Danlos syndrome with short stature and limb anomalies BBIP1 99.64 0 Bardet-Biedl syndrome 18 BBS1 99.66 0 Bardet-Biedl syndrome 1 BBS10 99.57 0 Bardet-Biedl syndrome 10 BBS12 99.52 0 Bardet-Biedl syndrome 12 BBS2 99.32 0 Bardet-Biedl syndrome 2 BBS4 99.49 0 Bardet-Biedl syndrome 4 BBS5 98.49 0 Bardet-Biedl syndrome 5 BBS7 99.00 0 Bardet-Biedl syndrome 7 BBS9 98.68 0 Bardet-Biedl syndrome 9 BCKDHB 98.82 0 Maple syrup urine disease, type Ib BCL11A 99.16 0 Dias-Logan syndrome BCOR 96.85 0 Microphthalmia, syndromic 2 BCS1L 99.69 0 Leigh syndrome BLM 99.07 0 Bloom syndrome BRAF 94.78 0 Noonan syndrome 7 BRPF1 99.67 0 Intellectual developmental disorder with dysmorphic facies and ptosis BRWD3 93.74 0 Mental retardation, X-linked 93 BSCL2 99.67 0 Encephalopathy, progressive, with or without lipodystrophy BTD 99.68 0 Biotinidase deficiency BUB1B 99.40 0 Mosaic variegated aneuploidy syndrome 1 C12ORF57 99.69 0 Platzer et al., AJMG 2014 : RM, hypoplasie corps caleux, colobome, épilepsie. C19ORF12 99.69 0 Neurodegeneration with brain iron accumulation 4 C2CD3 99.44 0 Orofaciodigital syndrome XIV CPLANE1 98.89 0 Joubert syndrome 17 CA8 99.19 0 Cerebellar ataxia and mental retardation with or without quadrupedal locomotion 3 CACNA1A 99.12 0 Epileptic encephalopathy, early infantile, 42 CACNA1C 99.65 0 Timothy syndrome CACNA1D 99.50 0 Primary aldosteronism, seizures, and neurologic abnormalities CAMK2A 99.67 0 Mental retardation, autosomal dominant 53 CAMK2B 96.34 0 Mental retardation, autosomal dominant 54 CANT1 99.60 0 Desbuquois dysplasia 1 CASK 95.36 0 Mental retardation and microcephaly with pontine and cerebellar hypoplasia CAV1 99.67 0 Partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome CAVIN1 99.31 0 Lipodystrophy, congenital generalized, type 4 CBL 99.54 0 Noonan syndrome-like disorder with or without juvenile myelomonocytic leukemia CBS 99.69 0 Homocystinuria, B6-responsive and nonresponsive types CC2D1A 99.64 0 Mental retardation, autosomal recessive 3 CC2D2A 99.11 0 Joubert syndrome 9 CCDC22 99.91 0 Ritscher-Schinzel syndrome 2 CCDC39 98.07 0 Ciliary dyskinesia, primary, 14 CCDC78 99.69 0 Myopathy, centronuclear, 4 CCDC88C 99.38 0 Hydrocephalus, nonsyndromic, autosomal recessive CD96 99.13 0 C syndrome CDC45 99.57 0 Meier-Gorlin syndrome 7 CDC6 99.32 0 Meier-Gorlin syndrome 5 CDH15 96.19 0 Mental retardation, autosomal dominant 3 CDK13 95.39 0 Congenital heart defects, dysmorphic facial features, and intellectual developmental disorder CDK5RAP2 99.45 0 Microcephaly 3, primary, autosomal recessive CDKL5 87.62 0 Epileptic encephalopathy, early infantile, 2 CDON 98.90 0 Holoprosencephaly 11 CDT1 89.72 0 Meier-Gorlin syndrome 4 CENPJ 99.19 0 Microcephaly 6, primary, autosomal recessive CEP135 97.81 0 Microcephaly 8, primary, autosomal recessive CEP152 98.40 0 Microcephaly 9, primary, autosomal recessive CEP290 97.64 0 Joubert syndrome 5 CEP41 99.07 0 Joubert syndrome 15 CEP57 99.09 0 Mosaic variegated aneuploidy syndrome 2 CEP63 99.06 0 Seckel syndrome 6 CHAMP1 99.63 0 Mental retardation, autosomal dominant 40 CHAT 97.70 0 Myasthenic syndrome, congenital, 6, presynaptic CHD2 99.18 0 Epileptic encephalopathy, childhood-onset CHD4 99.65 0 Sifrim-Hitz-Weiss syndrome CHD7 99.53 0 CHARGE syndrome CHD8 99.58 0 Autism, susceptibility to, 18 CHKB 97.97 0 Muscular dystrophy, congenital, megaconial type CHMP1A 99.59 0 Pontocerebellar hypoplasia, type 8 CHRNA4 90.96 0 Epilepsy, nocturnal frontal lobe, 1 CHRND 99.68 0 Myasthenic syndrome, congenital, 3B, fast-channel CISD2 98.61 0 Wolfram syndrome 2 CLCN4 99.27 0 Mental retardation, X-linked 49/15 CLN3 99.69 0 Ceroid lipofuscinosis, neuronal, 3 CLN5 97.69 0 Ceroid lipofuscinosis, neuronal, 5 CLN6 85.06 0 Ceroid lipofuscinosis, neuronal, 6 CLN8 99.69 0 Ceroid lipofuscinosis, neuronal, 8 CLP1 99.68 0 Pontocerebellar hypoplasia, type 10 CLPB 99.62 0 3-methylglutaconic aciduria, type VII, with cataracts, neurologic involvement and neutropenia CNKSR2 91.50 0 Houge et al., Mol Syndromol 2012 : ID CNTNAP2 99.39 0 Pitt-Hopkins like syndrome 1 COASY 99.68 0 Neurodegeneration with brain iron accumulation 6 COG1 98.34 0 Congenital disorder of glycosylation, type IIg COG5 99.11 0 Congenital disorder of glycosylation, type IIi COG6 98.39 0 Congenital disorder of glycosylation, type IIl COG7 99.66 0 Congenital disorder of glycosylation, type IIe COG8 97.38 0 Congenital disorder of glycosylation, type IIh COL4A1 97.86 0 Porencephaly 1 COL4A2 99.62 0 Porencephaly 2 CERT1 99.15 0 Mental retardation, autosomal dominant 34 COLEC10 99.16 0 Mental retardation, autosomal dominant 34 COLEC11 99.67 0 3MC syndrome 2 COQ2 94.52 0 Coenzyme Q10 deficiency, primary, 1 COQ4 98.74 0 Coenzyme Q10 deficiency, primary, 7 COQ6 99.60 0 Coenzyme Q10 deficiency, primary, 6 COQ7 99.40 0 Coenzyme Q10 deficiency, primary, 8 COQ8A 99.69 0 Coenzyme Q10 deficiency, primary, 4 COQ9 98.23 0 Coenzyme Q10 deficiency, primary, 5 COX10 99.65 0 Leigh syndrome due to mitochondrial COX4 deficiency CRADD 99.63 0 Mental retardation, autosomal recessive 34, with variant lissencephaly CRBN 98.86 0 Mental retardation, autosomal recessive 2 CREBBP 99.62 0 Rubinstein-Taybi syndrome 1 CSNK2A1 99.32 0 Okur-Chung neurodevelopmental syndrome CSPP1 98.95 0 Joubert syndrome 21 CTC1 99.57 0 Cerebroretinal microangiopathy with calcifications and cysts CTCF 99.65 0 Mental retardation, autosomal dominant 21 CTNNB1 99.65 0 Mental retardation, autosomal dominant 19 CTSA 99.59 0 Galactosialidosis CTSD 94.51 0 Ceroid lipofuscinosis, neuronal, 10 CUL4B 84.65 0 Mental retardation, X-linked, syndromic 15 (Cabezas type) CYB5R3 88.44 0 Methemoglobinemia, type I CYP27A1 97.94 0 Cerebrotendinous xanthomatosis D2HGDH 98.50 0 D-2-hydroxyglutaric aciduria DAG1 99.69 0 Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 9 DARS2 99.20 0 Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation DCAF17 93.81 0 Woodhouse-Sakati syndrome DCC 99.55 0 Mirror movements 1 and/or agenesis of the corpus callosum DCPS 99.69 0 Al-Raqad syndrome DCX 96.94 0 Lissencephaly, X-linked DDB2 99.69 0 Xeroderma pigmentosum, group E, DDB-negative subtype DDHD2 97.74 0 Spastic paraplegia 54, autosomal recessive DDX11 99.66 0 Warsaw breakage syndrome DDX3X 96.52 0 Mental retardation, X-linked 102 DEAF1 92.63 0 Mental retardation, autosomal dominant 24 DHCR24 99.34 0 Desmosterolosis DHCR7 99.68 0 Smith-Lemli-Opitz syndrome DHFR 98.50 0 Megaloblastic anemia due to dihydrofolate reductase deficiency DHX30 99.51 0 Lessel et al., AJHG 2017 : global developmental delay (GDD), intellectual disability (ID), severe speech impairment and gait abnormalities. DIAPH1 95.85 0 Seizures, cortical blindness, microcephaly syndrome DKC1 91.60 0 Dyskeratosis congenita, X-linked DLD 99.08 0 Dihydrolipoamide dehydrogenase deficiency DLG3 98.91 0 Mental retardation, X-linked 90 DLL4 99.61 0 Adams-Oliver syndrome 6 DNAJC19 97.60 0 3-methylglutaconic aciduria, type V DNM1 96.84 0 Epileptic encephalopathy, early infantile, 31 DNMT3A 99.69 0 Tatton-Brown-Rahman syndrome DNMT3B 99.69 0 Immunodeficiency-centromeric instability-facial anomalies syndrome 1 DOCK6 97.92 0 Adams-Oliver syndrome 2 DOCK8 99.24 0 Hyper-IgE recurrent infection syndrome, autosomal recessive DPAGT1 99.68 0 Congenital disorder of glycosylation, type Ij DPH1 99.67 0 Developmental delay with short stature, dysmorphic features, and sparse hair DPM1 99.27 0 Congenital disorder of glycosylation, type Ie DPP6 99.57 0 Mental retardation, autosomal dominant 33 DSCAM 99.29 0 Wang et al., Nat Commun 2016 : Autisme DYNC1H1 99.50 0 Mental retardation, autosomal dominant 13 DYRK1A 99.53 0 Mental retardation, autosomal dominant 7 EARS2 99.64 0 Combined oxidative phosphorylation deficiency 12 EBF3 98.59 0 Hypotonia, ataxia, and delayed development syndrome EBP 99.89 0 MEND syndrome ECHS1 98.49 0 Mitochondrial short-chain enoyl-CoA hydratase 1 deficiency EDC3 99.68 0 Mental retardation, autosomal recessive 50 EEF1A2 88.74 0 Mental retardation, autosomal dominant 38 EFNB1 99.39 0 Craniofrontonasal dysplasia EFTUD2 99.44 0 Mandibulofacial dysostosis, Guion-Almeida type EHMT1 95.40 0 Kleefstra syndrome EIF2AK3 94.12 0 Wolcott-Rallison syndrome EIF2S3 97.88 0 Mental retardation, X-linked, syndromic, Borck type ELOVL4 99.45 0 Ichthyosis, spastic quadriplegia, and mental retardation ELP2 98.99 0 Mental retardation, autosomal recessive 58 EML1 96.28 0 Band heterotopia EMX2 99.48 0 Schizencephaly ENTPD1 99.05 0 Spastic paraplegia 64, autosomal recessive EOGT 99.33 0 Adams-Oliver syndrome 4 EP300 99.56 0 Rubinstein-Taybi syndrome 2 EPB41L1 99.69 0 Mental retardation, autosomal dominant 11 EPG5 99.47 0 Vici syndrome ERCC2 99.67 0 Cerebrooculofacioskeletal syndrome 2 ERCC3 99.68 0 Xeroderma pigmentosum, group B ERCC4 99.35 0 Xeroderma pigmentosum, type F/Cockayne syndrome ERCC5 99.48 0 Xeroderma pigmentosum, group G/Cockayne syndrome ERCC6 99.07 0 Cerebrooculofacioskeletal syndrome 1 ERCC8 99.27 0 Cockayne syndrome, type A ERLIN2 99.32 0 Spastic paraplegia 18, autosomal recessive ESCO2 98.50 0 Roberts syndrome ETHE1 99.60 0 Ethylmalonic encephalopathy EXOSC3 99.53 0 Pontocerebellar hypoplasia, type 1B EZH2 99.41 0 Weaver syndrome EZR 99.63 0 Riecken et al., Hum Mut 2015 : ID FAM126A 98.81 0 Leukodystrophy, hypomyelinating, 5 FARS2 99.56 0 Combined oxidative phosphorylation deficiency 14 FAT4 99.39 0 Van Maldergem syndrome 2 FBXL4 99.46 0 Mitochondrial DNA depletion syndrome 13 (encephalomyopathic type) FBXO31 93.34 0 Mental retardation, autosomal recessive 45 FGD1 98.23 0 Mental retardation, X-linked syndromic 16 FGFR1 99.69 0 Hypogonadotropic hypogonadism 2 with or without anosmia FGFR2 99.67 0 Saethre-Chotzen syndrome FGFR3 95.86 0 Crouzon syndrome with acanthosis nigricans FH 99.29 0 Fumarase deficiency FKRP 85.03 0 Muscular dystrophy-dystroglycanopathy (congenital with or without mental retardation), type B, 5 FKTN 99.13 0 Muscular dystrophy-dystroglycanopathy (congenital without mental retardation), type B, 4 FLNA 99.73 0 Heterotopia, periventricular FMN2 99.05 0 Mental retardation, autosomal recessive 47 FMR1 94.48 0 Fragile X tremor/ataxia syndrome FOLR1 99.69 0 Neurodegeneration due to cerebral folate transport deficiency FOXG1 84.20 0 Rett syndrome, congenital variant FOXP1 99.55 0 Mental retardation with language impairment and with or without autistic features FOXP2 99.34 0 Speech-language disorder-1 FOXRED1 99.63 0 Leigh syndrome due to mitochondrial complex I deficiency FRAS1 99.57 0 Fraser syndrome 1 FREM2 99.23 0 Fraser syndrome 2 FRMPD4 96.56 0 Mental retardation, X-linked 104 FTCD 95.82 0 Glutamate formiminotransferase deficiency FTL 99.55 0 Neurodegeneration with brain iron accumulation 3 FTO 99.47 0 Growth retardation, developmental delay, facial dysmorphism FTSJ1 99.69 0 Mental retardation, X-linked 9/44 FUCA1 98.18 0 Fucosidosis GABRA3 87.08 0 Niturad et al., Brain 2017 : range of epileptic seizure types, a varying degree of intellectual disability and developmental delay, sometimes with dysmorphic features or nystagmus. GABRB3 94.66 0 Epileptic encephalopathy, early infantile, 43 GABRG2 99.57 0 Epilepsy, generalized, with febrile seizures plus, type 3 GALT 99.68 0 Galactosemia GAMT 93.42 0 Cerebral creatine deficiency syndrome 2 GAN 98.90 0 Giant axonal neuropathy-1 GATAD2B 99.69 0 Mental retardation, autosomal dominant 18 GATM 94.01 0 Cerebral creatine deficiency syndrome 3 GBE1 98.82 0 Glycogen storage disease IV GCH1 93.92 0 Dystonia, DOPA-responsive, with or without hyperphenylalaninemia GCSH 86.02 0 Glycine encephalopathy GDI1 95.21 0 Mental retardation, X-linked 41 GFAP 99.69 0 Alexander disease GJC2 73.70 0 Leukodystrophy, hypomyelinating, 2 GLB1 99.56 0 GM1-gangliosidosis, type I GLDC 97.83 0 Glycine encephalopathy GLI2 98.60 0 Holoprosencephaly 9 GLI3 99.55 0 Greig cephalopolysyndactyly syndrome GLUL 99.68 0 Glutamine deficiency, congenital GLYCTK 99.69 0 D-glyceric aciduria GM2A 99.68 0 GM2-gangliosidosis, AB variant GMPPA 99.69 0 Alacrima, achalasia, and mental retardation syndrome GMPPB 99.64 0 Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14 GNAI3 99.08 0 Auriculocondylar syndrome 1 GNAO1 99.66 0 Epileptic encephalopathy, early infantile, 17 GNAS 97.96 0 Pseudohypoparathyroidism Ia GNPAT 97.06 0 Rhizomelic chondrodysplasia punctata, type 2 GNPTAB 99.49 0 Mucolipidosis II alpha/beta GNPTG 90.19 0 Mucolipidosis III gamma GNS 99.55 0 Mucopolysaccharidosis type IIID GPC3 91.66 0 Simpson-Golabi-Behmel syndrome, type 1 GPHN 99.58 0 Molybdenum cofactor deficiency C GPSM2 99.10 0 Chudley-McCullough syndrome GPT2 95.20 0 Mental retardation, autosomal recessive 49 GRIA3 89.99 0 Mental retardation, X-linked 94 GRID2 99.47 0 Spinocerebellar ataxia, autosomal recessive 18 GRIK2 99.13 0 Mental retardation, autosomal recessive, 6 GRIN1 99.54 0 Mental retardation, autosomal dominant 8 GRIN2A 99.68 0 Epilepsy, focal, with speech disorder and with or without mental retardation GRIN2B 99.66 0 Mental retardation, autosomal dominant 6 GRIP1 99.65 0 Fraser syndrome 3 GRM1 99.46 0 Spinocerebellar ataxia 44 GSS 99.59 0 Glutathione synthetase deficiency GTF2E2 98.86 0 Trichothiodystrophy 6, nonphotosensitive GTF2H5 99.64 0 Trichothiodystrophy 3, photosensitive GTPBP3 97.37 0 Combined oxidative phosphorylation deficiency 23 GUSB 98.73 0 Mucopolysaccharidosis VII HACE1 96.37 0 Spastic paraplegia and psychomotor retardation with or without seizures HCFC1 99.76 0 Spastic paraplegia and psychomotor retardation with or without seizures HCN1 94.14 0 Epileptic encephalopathy, early infantile, 24 HDAC4 99.68 0 Fisch et al., AJMG 2016 : ID HDAC8 99.17 0 Cornelia de Lange syndrome 5 HECW2 99.50 0 Neurodevelopmental disorder with hypotonia, seizures, and absent language HEPACAM 91.30 0 Megalencephalic leukoencephalopathy with subcortical cysts 2B, remitting, with or without mental retardation HERC1 99.49 0 Macrocephaly, dysmorphic facies, and psychomotor retardation HERC2 99.66 0 Mental retardation, autosomal recessive 38 HESX1 98.36 0 Growth hormone deficiency with pituitary anomalies HEXA 99.67 0 Tay-Sachs disease HEXB 97.84 0 Sandhoff disease, infantile, juvenile, and adult forms HGSNAT 94.00 0 Mucopolysaccharidosis type IIIC (Sanfilippo C) HIVEP2 99.60 0 Mental retardation, autosomal dominant 43 HLCS 99.60 0 Holocarboxylase synthetase deficiency HNMT 99.26 0 Mental retardation, autosomal recessive 51 HNRNPH2 99.85 0 Mental retardation, X-linked, syndromic, Bain type HNRNPK 99.17 0 Au-Kline syndrome HNRNPU 98.33 0 Epileptic encephalopathy, early infantile, 54 HOXA1 99.65 0 Athabaskan brainstem dysgenesis syndrome HPRT1 75.78 0 Lesch-Nyhan syndrome HRAS 99.69 0 Costello syndrome HSD17B10 99.97 0 HSD10 mitochondrial disease HSPG2 98.62 0 Dyssegmental dysplasia, Silverman-Handmaker type HUWE1 97.92 0 Mental retardation, X-linked syndromic, Turner type IARS1 99.32 0 Growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy IARS2 99.11 0 Cataracts, growth hormone deficiency, sensory neuropathy, sensorineural hearing loss, and skeletal dysplasia IDS 97.07 0 Mucopolysaccharidosis II IDUA 77.72 0 Mucopolysaccharidosis Ih/s IER3IP1 98.86 0 Microcephaly, epilepsy, and diabetes syndrome IFIH1 99.07 0 Aicardi-Goutieres syndrome 7 IFT172 99.62 0 Short-rib thoracic dysplasia 10 with or without polydactyly IFT27 99.69 0 Bardet-Biedl syndrome 19 IFT57 98.66 0 Thevenon et al., Clin Genet 2016 : Oro-facial-digital syndrome IGF1 99.63 0 Growth retardation with deafness and mental retardation due to IGF1 deficiency IL1RAPL1 93.86 0 Mental retardation, X-linked 21/34 INPP5E 98.14 0 Joubert syndrome 1 INTU 98.49 0 Bruel et al., JMG 2017 : oro-facial-digital syndrome IQSEC2 97.05 0 Mental retardation, X-linked 1/78 IRX5 89.09 0 Hamamy syndrome CRPPA 92.51 0 Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7 ITGA7 99.67 0 Muscular dystrophy, congenital, due to ITGA7 deficiency ITPR1 99.38 0 Spinocerebellar ataxia 29, congenital nonprogressive JAM3 99.20 0 Hemorrhagic destruction of the brain, subependymal calcification, and cataracts KANSL1 99.63 0 Koolen-De Vries syndrome KAT6A 99.60 0 Mental retardation, autosomal dominant 32 KAT6B 99.21 0 Genitopatellar syndrome KCNC1 99.05 0 Epilepsy, progressive myoclonic 7 KCNC3 76.28 0 Spinocerebellar ataxia 13 KCNH1 98.56 0 Temple-Baraitser syndrome KCNJ10 99.68 0 SESAME syndrome KCNJ11 99.69 0 Diabetes, permanent neonatal, with or without neurologic features KCNK9 99.67 0 Birk-Barel mental retardation dysmorphism syndrome KCNMA1 99.54 0 Paroxysmal nonkinesigenic dyskinesia, 3, with or without generalized epilepsy KCNQ2 98.93 0 Epileptic encephalopathy, early infantile, 7 KCNQ5 96.45 0 Mental retardation, autosomal dominant 46 KCNT1 98.70 0 Epileptic encephalopathy, early infantile, 14 KCTD7 95.20 0 Epilepsy, progressive myoclonic 3, with or without intracellular inclusions KDM1A 96.83 0 Cleft palate, psychomotor retardation, and distinctive facial features KDM5C 99.87 0 Mental retardation, X-linked, syndromic, Claes-Jensen type KDM6A 94.07 0 Kabuki syndrome 2 KIAA0586 92.34 0 Joubert syndrome 23 KIAA0753 99.23 0 Orofaciodigital syndrome XV NEXMIF 97.66 0 Mental retardation, X-linked 98 KIF11 98.74 0 Microcephaly with or without chorioretinopathy, lymphedema, or mental retardation KIF1A 99.66 0 Mental retardation, autosomal dominant 9 KIFBP 96.44 0 Goldberg-Shprintzen megacolon syndrome KIF4A 99.41 0 Mental retardation, X-linked 100 KIF5A 99.35 0 Myoclonus, intractable, neonatal KIF5C 96.19 0 Cortical dysplasia, complex, with other brain malformations 2 KIF7 99.42 0 Joubert syndrome 12 KIRREL3 99.66 0 Mental retardation, autosomal dominant 4 KLC2 99.69 0 Spastic paraplegia, optic atrophy, and neuropathy KMT2A 97.93 0 Wiedemann-Steiner syndrome KMT2C 99.31 0 Kleefstra syndrome 2 KMT2D 99.67 0 Kabuki syndrome 1 KMT2E 98.54 0 Dong et al., Cell Rep 2014 : trouble du spectre autistique KMT5B 99.31 0 Stessman et al., Nat Genet 2017 : autisme et retard développemental KNL1 92.70 0 Microcephaly 4, primary, autosomal recessive KPTN 99.37 0 Mental retardation, autosomal recessive 41 KRAS 99.32 0 Noonan syndrome 3 L1CAM 99.66 0 CRASH syndrome L2HGDH 98.45 0 L-2-hydroxyglutaric aciduria LAMA1 99.13 0 Poretti-Boltshauser syndrome LAMA2 99.46 0 Muscular dystrophy, congenital, due to partial LAMA2 deficiency LAMB1 99.50 0 Lissencephaly 5 LAMC3 97.99 0 Cortical malformations, occipital LAMP2 93.32 0 Danon disease LARGE1 99.64 0 Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 6 LARP7 97.40 0 Alazami syndrome LAS1L 99.76 0 Wilson-Turner syndrome LIAS 98.94 0 Hyperglycinemia, lactic acidosis, and seizures LIG4 99.55 0 LIG4 syndrome LINS1 98.65 0 Mental retardation, autosomal recessive 27 LIPT1 98.69 0 Lipoyltransferase 1 deficiency LMBRD1 96.94 0 Methylmalonic aciduria and homocystinuria, cblF type LMNA 99.49 0 Emery-Dreifuss muscular dystrophy 3, AR LRP2 99.40 0 Donnai-Barrow syndrome LZTFL1 98.67 0 Bardet-Biedl syndrome 17 LZTR1 99.56 0 Noonan syndrome 10 MAGEL2 98.06 0 Schaaf-Yang syndrome MAN1B1 98.88 0 Mental retardation, autosomal recessive 15 MAN2B1 99.40 0 Mannosidosis, alpha-, types I and II MANBA 99.01 0 Mannosidosis, beta MAOA 85.51 0 Brunner syndrome MAP2K1 99.62 0 Cardiofaciocutaneous syndrome 3 MAP2K2 99.01 0 Cardiofaciocutaneous syndrome 4 MASP1 99.59 0 3MC syndrome 1 MAT1A 99.66 0 Hypermethioninemia, persistent, autosomal dominant, due to methionine adenosyltransferase I/III deficiency MBD5 99.52 0 Mental retardation, autosomal dominant 1 MBOAT7 99.50 0 Mental retardation, autosomal recessive 57 MBTPS2 96.46 0 IFAP syndrome with or without BRESHECK syndrome MCCC1 99.50 0 3-Methylcrotonyl-CoA carboxylase 1 deficiency MCOLN1 93.43 0 Mucolipidosis IV MCPH1 98.40 0 Microcephaly 1, primary, autosomal recessive MECP2 89.77 0 Rett syndrome MED12 99.82 0 Opitz-Kaveggia syndrome MED13L 99.52 0 Mental retardation and distinctive facial features with or without cardiac defects MED17 98.79 0 Microcephaly, postnatal progressive, with seizures and brain atrophy MED23 98.87 0 Mental retardation, autosomal recessive 18 MEF2C 99.52 0 Mental retardation, stereotypic movements, epilepsy, and/or cerebral malformations MEIS2 99.65 0 Cleft palate, cardiac defects, and mental retardation METTL23 99.62 0 Mental retardation, autosomal recessive 44 MFSD8 99.30 0 Ceroid lipofuscinosis, neuronal, 7 MID1 97.46 0 Opitz GBBB syndrome, type I MKKS 99.58 0 Bardet-Biedl syndrome 6 MKS1 99.54 0 Bardet-Biedl syndrome 13 MLYCD 87.33 0 Malonyl-CoA decarboxylase deficiency MMACHC 99.68 0 Methylmalonic aciduria and homocystinuria, cblC type MOCS1 99.68 0 Molybdenum cofactor deficiency A MOCS2 99.48 0 Molybdenum cofactor deficiency B MOGS 92.25 0 Congenital disorder of glycosylation, type IIb MPDU1 99.69 0 Congenital disorder of glycosylation, type If MPDZ 99.22 0 Hydrocephalus, nonsyndromic, autosomal recessive 2 MPLKIP 99.63 0 Trichothiodystrophy 4, nonphotosensitive MTFMT 97.00 0 Combined oxidative phosphorylation deficiency 15 MTHFR 99.58 0 Homocystinuria due to MTHFR deficiency MTM1 94.11 0 Myotubular myopathy, X-linked MTOR 99.61 0 Smith-Kingsmore syndrome MTR 99.55 0 Homocystinuria-megaloblastic anemia, cblG complementation type MTRR 99.33 0 Homocystinuria-megaloblastic anemia, cbl E type MVK 99.69 0 Mevalonic aciduria MYCN 82.91 0 Feingold syndrome 1 MYO5A 97.60 0 Griscelli syndrome, type 1 MYT1L 99.59 0 Mental retardation, autosomal dominant 39 NAA10 87.47 0 Ogden syndrome NACC1 99.66 0 Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination NAGA 99.67 0 Schindler disease, type I NAGLU 84.28 0 Mucopolysaccharidosis type IIIB (Sanfilippo B) NALCN 99.38 0 Congenital contractures of the limbs and face, hypotonia, and developmental delay NARS2 98.96 0 Combined oxidative phosphorylation deficiency 24 NBN 98.67 0 Nijmegen breakage syndrome NDE1 99.69 0 Lissencephaly 4 (with microcephaly) NDP 99.56 0 Norrie disease NDST1 99.67 0 Mental retardation, autosomal recessive 46 NDUFA1 97.69 0 Mitochondrial complex I deficiency NDUFA11 99.69 0 Mitochondrial complex I deficiency NDUFA12 99.64 0 Leigh syndrome due to mitochondrial complex 1 deficiency NDUFA2 99.69 0 Leigh syndrome due to mitochondrial complex I deficiency NDUFA9 99.27 0 Leigh syndrome due to mitochondrial complex I deficiency NDUFAF6 89.55 0 Leigh syndrome due to mitochondrial complex I deficiency NDUFS2 99.25 0 Mitochondrial complex I deficiency NDUFS3 99.67 0 Leigh syndrome due to mitochondrial complex I deficiency NDUFS4 99.05 0 Mitochondrial complex I deficiency NDUFS7 99.38 0 Leigh syndrome NEDD4L 98.92 0 Periventricular nodular heterotopia 7 NFIA 99.44 0 Brain malformations and urinary tract defects NFIX 99.64 0 Sotos syndrome 2 NGF 99.66 0 Neuropathy, hereditary sensory and autonomic, type V NHEJ1 99.67 0 Severe combined immunodeficiency with microcephaly, growth retardation, and sensitivity to ionizing radiation NHP2 99.64 0 Dyskeratosis congenita, autosomal recessive 2 NHS 88.25 0 Nance-Horan syndrome NIN 99.20 0 Seckel syndrome 7 NIPBL 98.53 0 Cornelia de Lange syndrome 1 NKX2-1 92.05 0 Choreoathetosis, hypothyroidism, and neonatal respiratory distress NONO 98.37 0 Mental retardation, X-linked, syndromic 34 NOTCH1 96.74 0 Adams-Oliver syndrome 5 NPC1 98.34 0 Niemann-Pick disease, type C1 NPC2 99.67 0 Niemann-pick disease, type C2 NPHP1 99.24 0 Joubert syndrome 4 NPHP3 98.15 0 Meckel syndrome 7 NR2F1 86.66 0 Bosch-Boonstra-Schaaf optic atrophy syndrome NR5A1 99.25 0 Adrenocortical insufficiency NRAS 99.61 0 Noonan syndrome 6 NRXN1 99.52 0 Pitt-Hopkins-like syndrome 2 NSD1 99.26 0 Sotos syndrome 1 NSDHL 99.39 0 CHILD syndrome NSUN2 95.86 0 Mental retardation, autosomal recessive 5 OCLN 99.47 0 Pseudo-TORCH syndrome 1 OCRL 92.17 0 Lowe syndrome OFD1 92.99 0 Orofaciodigital syndrome I OGT 96.41 0 Mental retardation, X-linked 106 OPHN1 90.64 0 Mental retardation, X-linked, with cerebellar hypoplasia and distinctive facial appearance ORC1 99.49 0 Meier-Gorlin syndrome 1 ORC4 98.60 0 Meier-Gorlin syndrome 2 ORC6 98.10 0 Meier-Gorlin syndrome 3 OSGEP 99.65 0 Braun et al., Nat Genet 2017 : Galloway-Mowat syndrome OTC 92.10 0 Ornithine transcarbamylase deficiency OTUD6B 97.03 0 Intellectual developmental disorder with dysmorphic facies, seizures, and distal limb anomalies PACS1 97.17 0 Schuurs-Hoeijmakers syndrome PAFAH1B1 98.98 0 Lissencephaly 1 PAH 99.66 0 Phenylketonuria PAK3 87.10 0 Mental retardation, X-linked 30/47 PANK2 95.75 0 Neurodegeneration with brain iron accumulation 1 PAX1 82.57 0 Otofaciocervical syndrome 2 PAX3 99.68 0 Craniofacial-deafness-hand syndrome PAX6 99.51 0 Aniridia PC 99.69 0 Pyruvate carboxylase deficiency PCDH19 99.22 0 Epileptic encephalopathy, early infantile, 9 PCGF2 99.69 0 Fitzgerald et al., Nature 2015 : retard mental, retard dévelopemental PCNT 99.50 0 Microcephalic osteodysplastic primordial dwarfism, type II PDE4D 97.76 0 Acrodysostosis 2, with or without hormone resistance PDHA1 97.16 0 Pyruvate dehydrogenase E1-alpha deficiency PDHB 99.40 0 Pyruvate dehydrogenase E1-beta deficiency PDHX 98.49 0 Lacticacidemia due to PDX1 deficiency PDSS1 82.84 0 Coenzyme Q10 deficiency, primary, 2 PDSS2 98.95 0 Coenzyme Q10 deficiency, primary, 3 PEPD 99.61 0 Prolidase deficiency PEX1 98.83 0 Peroxisome biogenesis disorder 1A (Zellweger) PEX10 83.86 0 Peroxisome biogenesis disorder 6A (Zellweger) PEX11B 99.63 0 Peroxisome biogenesis disorder 14B PEX12 99.40 0 Peroxisome biogenesis disorder 3A (Zellweger) PEX13 99.25 0 Peroxisome biogenesis disorder 11A (Zellweger) PEX14 99.66 0 Peroxisome biogenesis disorder 13A (Zellweger) PEX16 99.69 0 Peroxisome biogenesis disorder 8A (Zellweger) PEX19 99.60 0 Peroxisome biogenesis disorder 12A (Zellweger) PEX2 99.69 0 Peroxisome biogenesis disorder 5A (Zellweger) PEX26 96.96 0 Peroxisome biogenesis disorder 7A (Zellweger) PEX3 98.89 0 Peroxisome biogenesis disorder 10A (Zellweger) PEX5 99.15 0 Peroxisome biogenesis disorder 2A (Zellweger) PEX6 98.57 0 Peroxisome biogenesis disorder 4A (Zellweger) PEX7 90.36 0 Peroxisome biogenesis disorder 9B PGAP1 97.25 0 Mental retardation, autosomal recessive 42 PGAP2 99.68 0 Hyperphosphatasia with mental retardation syndrome 3 PGAP3 99.15 0 Hyperphosphatasia with mental retardation syndrome 4 PGK1 99.16 0 Phosphoglycerate kinase 1 deficiency PHC1 99.66 0 Microcephaly 11, primary, autosomal recessive PHF6 84.23 0 Borjeson-Forssman-Lehmann syndrome PHF8 99.04 0 Mental retardation syndrome, X-linked, Siderius type PHGDH 99.67 0 Phosphoglycerate dehydrogenase deficiency PHIP 95.93 0 Webster et al., Cold Spring Harb Mol Case Stud. 2016 : DD, ID, obésité et dysmorphies PIGA 92.30 0 Multiple congenital anomalies-hypotonia-seizures syndrome 2 PIGG 99.54 0 Mental retardation, autosomal recessive 53 PIGL 99.59 0 CHIME syndrome PIGN 97.78 0 Multiple congenital anomalies-hypotonia-seizures syndrome 1 PIGO 99.67 0 Hyperphosphatasia with mental retardation syndrome 2 PIGT 99.63 0 Multiple congenital anomalies-hypotonia-seizures syndrome 3 PIGV 99.66 0 Hyperphosphatasia with mental retardation syndrome 1 PIGW 99.68 0 Hyperphosphatasia with mental retardation syndrome 5 PIGY 99.66 0 Hyperphosphatasia with mental retardation syndrome 6 PIK3R2 91.70 0 Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1 PLA2G6 99.69 0 Neurodegeneration with brain iron accumulation 2B PLCB1 99.15 0 Epileptic encephalopathy, early infantile, 12 PLCB4 99.09 0 Auriculocondylar syndrome 2 PLOD1 98.58 0 Ehlers-Danlos syndrome, type VI PLP1 99.86 0 Pelizaeus-Merzbacher disease PMM2 98.47 0 Congenital disorder of glycosylation, type Ia PNKP 99.68 0 Microcephaly, seizures, and developmental delay PNP 99.66 0 Immunodeficiency due to purine nucleoside phosphorylase deficiency POC1A 99.26 0 Short stature, onychodysplasia, facial dysmorphism, and hypotrichosis POGZ 98.81 0 White-Sutton syndrome POLG 99.59 0 Mitochondrial DNA depletion syndrome 4B (MNGIE type) POLH 99.55 0 Xeroderma pigmentosum, variant type POLR3A 99.40 0 Leukodystrophy, hypomyelinating, 7, with or without oligodontia and/or hypogonadotropic hypogonadism POLR3B 99.29 0 Leukodystrophy, hypomyelinating, 8, with or without oligodontia and/or hypogonadotropic hypogonadism POMGNT1 99.66 0 Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 3 POMGNT2 99.69 0 Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8 POMK 99.66 0 Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 12 POMT1 99.56 0 Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 1 POMT2 98.42 0 Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 2 PORCN 99.91 0 Focal dermal hypoplasia PPM1D 98.20 0 Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold PPP1CB 99.40 0 Noonan syndrome-like disorder with loose anagen hair 2 PPP2R1A 99.69 0 Mental retardation, autosomal dominant 36 PPP2R5D 99.64 0 Mental retardation, autosomal dominant 35 PPT1 99.67 0 Ceroid lipofuscinosis, neuronal, 1 PQBP1 99.90 0 Renpenning syndrome PRICKLE1 99.67 0 Epilepsy, progressive myoclonic 1B PRMT7 99.21 0 Short stature, brachydactyly, intellectual developmental disability, and seizures PRPS1 98.61 0 Arts syndrome PRSS12 98.69 0 Mental retardation, autosomal recessive 1 PSAP 99.68 0 Krabbe disease, atypical PSMD12 99.44 0 Stankiewicz-Isidor syndrome PTCH1 97.64 0 Holoprosencephaly 7 PTCHD1 99.37 0 Autism, susceptibility to, X-linked 4 PTDSS1 99.56 0 Lenz-Majewski hyperostotic dwarfism PTEN 98.68 0 Cowden syndrome 1 PTPN11 97.30 0 LEOPARD syndrome 1 PUF60 99.56 0 Verheij syndrome PURA 84.89 0 Mental retardation, autosomal dominant 31 PUS1 93.31 0 Myopathy, lactic acidosis, and sideroblastic anemia 1 PYCR1 99.67 0 Cutis laxa, autosomal recessive, type IIB QDPR 96.67 0 Hyperphenylalaninemia, BH4-deficient, C RAB18 98.43 0 Warburg micro syndrome 3 RAB27A 95.80 0 Griscelli syndrome, type 2 RAB39B 99.96 0 Mental retardation, X-linked 72 RAB3GAP1 99.24 0 Warburg micro syndrome 1 RAB3GAP2 99.14 0 Martsolf syndrome RAC1 87.43 0 Mental retardation, autosomal dominant 48 RAD21 99.34 0 Cornelia de Lange syndrome 4 RAF1 99.65 0 Noonan syndrome 5 RAI1 97.85 0 Smith-Magenis syndrome RARB 99.52 0 Microphthalmia, syndromic 12 RARS2 99.20 0 Pontocerebellar hypoplasia, type 6 RASA2 95.15 0 Aoki et al., JHG 2016 : RASopathie RAX 78.51 0 Microphthalmia, isolated 3 RBBP8 96.69 0 Seckel syndrome 2 RBM10 99.86 0 TARP syndrome RBM28 99.55 0 Alopecia, neurologic defects, and endocrinopathy syndrome RBM8A 99.68 0 Thrombocytopenia-absent radius syndrome RBPJ 99.36 0 Adams-Oliver syndrome 3 RECQL4 91.13 0 Baller-Gerold syndrome RELN 99.47 0 Lissencephaly 2 (Norman-Roberts type) RERE 99.45 0 Neurodevelopmental disorder with or without anomalies of the brain, eye, or heart RFT1 97.48 0 Congenital disorder of glycosylation, type In RIT1 99.66 0 Noonan syndrome 8 RMND1 98.79 0 Combined oxidative phosphorylation deficiency 11 RNASEH2A 99.69 0 Aicardi-Goutieres syndrome 4 RNASEH2B 90.13 0 Aicardi-Goutieres syndrome 2 RNASEH2C 96.74 0 Aicardi-Goutieres syndrome 3 RNASET2 99.45 0 Leukoencephalopathy, cystic, without megalencephaly RNF113A 99.85 0 Trichothiodystrophy 5, nonphotosensitive ROGDI 90.00 0 Kohlschutter-Tonz syndrome RPGRIP1L 95.44 0 Joubert syndrome 7 RPIA 98.01 0 Ribose 5-phosphate isomerase deficiency RPS6KA3 85.79 0 Coffin-Lowry syndrome RRAS 94.39 0 Flex et al., HMG 2014 : RASopathie RTEL1 99.69 0 Dyskeratosis congenita, autosomal recessive 5 RTTN 98.71 0 Microcephaly, short stature, and polymicrogyria with seizures SALL1 99.68 0 Townes-Brocks branchiootorenal-like syndrome SAMHD1 99.47 0 Aicardi-Goutieres syndrome 5 SATB2 99.46 0 Glass syndrome SC5D 99.08 0 Lathosterolosis SCN1A 98.95 0 Epileptic encephalopathy, early infantile, 6 (Dravet syndrome) SCN2A 98.85 0 Epileptic encephalopathy, early infantile, 11 SCN8A 99.37 0 Epileptic encephalopathy, early infantile, 13 SCO2 99.68 0 Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1 SDCCAG8 99.19 0 Bardet-Biedl syndrome 16 SDHAF1 66.11 0 Mitochondrial complex II deficiency SEPSECS 99.07 0 Pontocerebellar hypoplasia type 2D SERAC1 98.98 0 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome SETBP1 98.39 0 Mental retardation, autosomal dominant 29 SETD2 99.30 0 Luscan-Lumish syndrome SETD5 99.55 0 Mental retardation, autosomal dominant 23 SGSH 96.47 0 Mucopolysaccharidosis type IIIA (Sanfilippo A) SHANK2 83.77 0 Autism susceptibility 17 SHANK3 78.63 0 Phelan-McDermid syndrome SHH 90.25 0 Holoprosencephaly 3 SHOC2 97.89 0 Noonan-like syndrome with loose anagen hair SHROOM4 99.52 0 Stocco dos Santos X-linked mental retardation syndrome SIL1 99.65 0 Marinesco-Sjogren syndrome SIN3A 99.56 0 Witteveen-Kolk syndrome SIX3 89.54 0 Holoprosencephaly 2 SKI 93.23 0 Shprintzen-Goldberg syndrome SLC12A6 99.13 0 Agenesis of the corpus callosum with peripheral neuropathy SLC16A2 99.71 0 Allan-Herndon-Dudley syndrome SLC17A5 98.53 0 Salla disease SLC19A3 99.50 0 Thiamine metabolism dysfunction syndrome 2 (biotin- or thiamine-responsive encephalopathy type 2) SLC1A4 97.40 0 Spastic tetraplegia, thin corpus callosum, and progressive microcephaly SLC25A1 86.05 0 Combined D-2- and L-2-hydroxyglutaric aciduria SLC25A12 99.45 0 Epileptic encephalopathy, early infantile, 39 SLC25A15 99.57 0 Hyperornithinemia-hyperammonemia-homocitrullinemia syndrome SLC25A19 99.66 0 Microcephaly, Amish type SLC25A22 99.68 0 Epileptic encephalopathy, early infantile, 3 SLC2A1 93.34 0 GLUT1 deficiency syndrome 1, infantile onset, severe SLC33A1 98.70 0 Congenital cataracts, hearing loss, and neurodegeneration SLC35A2 99.98 0 Congenital disorder of glycosylation, type IIm SLC35C1 99.69 0 Congenital disorder of glycosylation, type IIc SLC45A1 92.61 0 Intellectual developmental disorder with neuropsychiatric features SLC46A1 97.75 0 Folate malabsorption, hereditary SLC4A4 99.23 0 Renal tubular acidosis, proximal, with ocular abnormalities SLC6A1 99.61 0 Myoclonic-atonic epilepsy SLC6A17 99.68 0 Mental retardation, autosomal recessive 48 SLC6A3 99.68 0 Parkinsonism-dystonia, infantile SLC6A8 92.97 0 Cerebral creatine deficiency syndrome 1 SLC7A7 99.67 0 Lysinuric protein intolerance SLC9A6 80.47 0 Mental retardation, X-linked syndromic, Christianson type SMARCA2 97.63 0 Nicolaides-Baraitser syndrome SMARCA4 99.68 0 Coffin-Siris syndrome 4 SMARCB1 99.47 0 Coffin-Siris syndrome 3 SMARCE1 98.87 0 Coffin-Siris syndrome 5 SMC1A 97.41 0 Cornelia de Lange syndrome 2 SMC3 98.62 0 Cornelia de Lange syndrome 3 SMOC1 98.99 0 Microphthalmia with limb anomalies SMPD1 99.68 0 Niemann-Pick disease, type A SMS 83.70 0 Mental retardation, X-linked, Snyder-Robinson type SNAP29 98.97 0 Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome SNIP1 99.59 0 Psychomotor retardation, epilepsy, and craniofacial dysmorphism SNX14 97.83 0 Spinocerebellar ataxia, autosomal recessive 20 SOBP 96.13 0 Mental retardation, anterior maxillary protrusion, and strabismus SON 99.42 0 ZTTK syndrome SOS1 98.22 0 Noonan syndrome 4 SOS2 98.32 0 Noonan syndrome 9 SOX10 93.26 0 Waardenburg syndrome, type 2E, with or without neurologic involvement SOX11 84.37 0 Mental retardation, autosomal dominant, 27 SOX2 95.94 0 Optic nerve hypoplasia and abnormalities of the central nervous system SOX5 99.56 0 Lamb-Shaffer syndrome SPATA5 98.88 0 Epilepsy, hearing loss, and mental retardation syndrome SPECC1L 99.49 0 Opitz GBBB syndrome, type II SPR 77.10 0 Dystonia, dopa-responsive, due to sepiapterin reductase deficiency SPRED1 99.22 0 Legius syndrome SPTAN1 99.48 0 Epileptic encephalopathy, early infantile, 5 SRCAP 99.65 0 Floating-Harbor syndrome SRD5A3 96.86 0 Congenital disorder of glycosylation, type Iq ST3GAL3 99.66 0 Mental retardation, autosomal recessive 12 ST3GAL5 85.32 0 Salt and pepper developmental regression syndrome STAG1 98.01 0 Mental retardation, autosomal dominant 47 STAMBP 99.58 0 Microcephaly-capillary malformation syndrome STIL 99.24 0 Microcephaly 7, primary, autosomal recessive STRA6 99.67 0 Microphthalmia, syndromic 9 STT3A 99.55 0 Congenital disorder of glycosylation, type Iw STT3B 95.54 0 Congenital disorder of glycosylation, type Ix STX1B 99.68 0 Generalized epilepsy with febrile seizures plus, type 9 STXBP1 99.55 0 Epileptic encephalopathy, early infantile, 4 SUCLG1 98.06 0 Mitochondrial DNA depletion syndrome 9 (encephalomyopathic type with methylmalonic aciduria) SUOX 99.68 0 Sulfite oxidase deficiency SURF1 86.96 0 Leigh syndrome, due to COX IV deficiency SYN1 88.25 0 Epilepsy, X-linked, with variable learning disabilities and behavior disorders SYNCRIP 99.45 0 Lelieveld et al., Nat Neurosci 2016 : ID SYNE1 99.44 0 Spinocerebellar ataxia, autosomal recessive 8 SYNGAP1 99.68 0 Mental retardation, autosomal dominant 5 SYP 93.14 0 Mental retardation, X-linked 96 SYT14 88.69 0 Spinocerebellar ataxia, autosomal recessive 11 TAF1 97.05 0 Mental retardation, X-linked, syndromic 33 TAF2 98.57 0 Mental retardation, autosomal recessive 40 TBC1D23 97.70 0 Pontocerebellar hypoplasia, type 11 TBC1D24 99.68 0 Epileptic encephalopathy, early infantile, 16 TBC1D7 98.94 0 Macrocephaly/megalencephaly syndrome, autosomal recessive TBCE 98.41 0 Hypoparathyroidism-retardation-dysmorphism syndrome TBCK 98.05 0 Hypotonia, infantile, with psychomotor retardation and characteristic facies 3 TBL1XR1 98.00 0 Mental retardation, autosomal dominant 41 TCF20 99.69 0 Schäfgen et al., EJHG 2016 : TSA, DI, croissance excessive et hypotonie TCF4 99.65 0 Pitt-Hopkins syndrome TCOF1 99.61 0 Treacher Collins syndrome 1 TCTN1 99.08 0 Joubert syndrome 13 TCTN2 99.05 0 Joubert syndrome 24 TCTN3 99.61 0 Joubert syndrome 18 TECPR2 99.41 0 Spastic paraplegia 49, autosomal recessive TECR 99.69 0 Mental retardation, autosomal recessive 14 TFAP2A 99.48 0 Branchiooculofacial syndrome TGIF1 99.69 0 Holoprosencephaly 4 TH 98.57 0 Segawa syndrome, recessive THOC2 91.08 0 Mental retardation, X-linked 12/35 THOC6 99.66 0 Beaulieu-Boycott-Innes syndrome THRA 99.60 0 Hypothyroidism, congenital, nongoitrous, 6 TIMM8A 99.66 0 Mohr-Tranebjaerg syndrome TINF2 99.67 0 Dyskeratosis congenita, autosomal dominant 3 TMCO1 95.48 0 Craniofacial dysmorphism, skeletal anomalies, and mental retardation syndrome TMEM107 99.69 0 Orofaciodigital syndrome XVI TMEM138 99.68 0 Joubert syndrome 16 TMEM165 87.14 0 Congenital disorder of glycosylation, type IIk TMEM216 99.69 0 Joubert syndrome 2 TMEM231 99.62 0 Joubert syndrome 20 TMEM237 97.88 0 Joubert syndrome 14 TMEM67 97.57 0 Joubert syndrome 6 TMEM70 97.01 0 Mitochondrial complex V (ATP synthase) deficiency, nuclear type 2 TNK2 99.30 0 Hitomi et al., Ann Neurol 2013 : severe autosomal recessive infantile-onset epilepsy and ID TPK1 98.92 0 Thiamine metabolism dysfunction syndrome 5 (episodic encephalopathy type) TPP1 99.65 0 Spinocerebellar ataxia, autosomal recessive 7 TRAPPC11 98.70 0 Muscular dystrophy, limb-girdle, type 2S TRAPPC9 99.57 0 Mental retardation, autosomal recessive 13 TREX1 99.69 0 Aicardi-Goutieres syndrome 1, dominant and recessive TRIM32 99.68 0 Bardet-Biedl syndrome 11 TRIO 97.17 0 Mental retardation, autosomal dominant 44 TRIP12 99.18 0 Zhang et al., Hum Gen 2017 : intellectual disability with or without autism spectrum disorders, speech delay, and dysmorphic features. TRMT10A 99.08 0 Microcephaly, short stature, and impaired glucose metabolism 1 TRMU 94.99 0 Liver failure, transient infantile TRPV4 99.64 0 Spondylometaphyseal dysplasia, Kozlowski type TSEN2 99.60 0 Pontocerebellar hypoplasia type 2B TSEN54 87.28 0 Pontocerebellar hypoplasia type 2A TSFM 85.15 0 Combined oxidative phosphorylation deficiency 3 TSPAN7 98.69 0 Mental retardation, X-linked 58 TTC37 99.17 0 Trichohepatoenteric syndrome 1 TTC8 98.67 0 Bardet-Biedl syndrome 8 TTI2 99.57 0 Mental retardation, autosomal recessive 39 TUBA1A 99.69 0 Lissencephaly 3 TUBA8 97.24 0 Cortical dysplasia, complex, with other brain malformations 8 TUBB2A 95.11 0 Cortical dysplasia, complex, with other brain malformations 5 TUBB2B 99.68 0 Cortical dysplasia, complex, with other brain malformations 7 TUBB3 94.69 0 Cortical dysplasia, complex, with other brain malformations 1 TUBB4A 98.34 0 Leukodystrophy, hypomyelinating, 6 TUBG1 99.69 0 Cortical dysplasia, complex, with other brain malformations 4 TUBGCP6 99.69 0 Microcephaly and chorioretinopathy, autosomal recessive, 1 TUSC3 99.45 0 Mental retardation, autosomal recessive 7 TWIST1 59.51 0 Saethre-Chotzen syndrome UBE2A 81.32 0 Mental retardation, X-linked syndromic, Nascimento-type UBE3A 98.84 0 Angelman syndrome UBE3B 99.43 0 Kaufman oculocerebrofacial syndrome UBR1 98.99 0 Johanson-Blizzard syndrome UNC80 99.46 0 Hypotonia, infantile, with psychomotor retardation and characteristic facies 2 UPF3B 90.82 0 Mental retardation, X-linked, syndromic 14 UQCRQ 99.62 0 Mitochondrial complex III deficiency, nuclear type 4 UROC1 99.69 0 Urocanase deficiency USP18 99.69 0 Pseudo-TORCH syndrome 2 USP9X 93.59 0 Mental retardation, X-linked 99 VLDLR 97.10 0 Cerebellar hypoplasia and mental retardation with or without quadrupedal locomotion 1 VPS13B 98.95 0 Cohen syndrome VRK1 99.08 0 Pontocerebellar hypoplasia type 1A WAC 97.24 0 Desanto-Shinawi syndrome WDPCP 98.77 0 Bardet-Biedl syndrome 15 WDR26 99.46 0 Skraban-Deardorff syndrome WDR45 99.94 0 Neurodegeneration with brain iron accumulation 5 WDR45B 98.84 0 Suleiman et al., Clin Genet 2017 : intellectual disability, spastic quadriplegia, epilepsy, and cerebral hypoplasia WDR62 99.58 0 Microcephaly 2, primary, autosomal recessive, with or without cortical malformations WDR73 99.54 0 Galloway-Mowat syndrome WDR81 99.65 0 Cerebellar ataxia, mental retardation, and dysequilibrium syndrome 2 WWOX 99.63 0 Epileptic encephalopathy, early infantile, 28 XPA 95.49 0 Xeroderma pigmentosum, group A XPC 99.66 0 Xeroderma pigmentosum, group C XYLT1 91.40 0 Desbuquois dysplasia 2 YAP1 95.59 0 Coloboma, ocular, with or without hearing impairment, cleft lip/palate, and/or mental retardation YY1 97.61 0 Gabriele-de Vries syndrome ZBTB16 99.69 0 Skeletal defects, genital hypoplasia, and mental retardation ZBTB18 99.10 0 Mental retardation, autosomal dominant 22 ZBTB20 99.63 0 Primrose syndrome ZBTB24 99.63 0 Immunodeficiency-centromeric instability-facial anomalies syndrome-2 ZC4H2 97.81 0 Wieacker-Wolff syndrome ZDHHC9 98.90 0 Mental retardation, X-linked syndromic, Raymond type ZEB2 99.54 0 Mowat-Wilson syndrome ZFYVE26 99.53 0 Spastic paraplegia 15, autosomal recessive ZIC2 67.20 0 Holoprosencephaly 5 ZMPSTE24 98.68 0 Mandibuloacral dysplasia with type B lipodystrophy ZMYND11 99.50 0 Mental retardation, autosomal dominant 30 ZNF335 99.63 0 Microcephaly 10, primary, autosomal recessive ZNF41 99.90 0 Shoichet et al., AJHG 2013 : X-Linked Mental Retardation ZNF711 89.61 0 Mental retardation, X-linked 97 -
Movement Disorders - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments AARS1 100.00 0 ABAT 100.00 0 ACTB 100.00 0 ACTL6B 100.00 0 ADAR 100.00 0 ADCY5 94.82 0 ADPRS 97.19 0 AFG3L2 95.73 0 AGTPBP1 97.48 0 AIMP1 100.00 0 ALDH5A1 91.82 0 ALG13 99.52 0 ALG6 100.00 0 ALS2 100.00 0 AMT 100.00 0 ANO3 99.99 0 AOPEP 98.17 0 AP3D1 100.00 0 AP4M1 100.00 0 AP5Z1 100.00 0 APTX 100.00 0 ARG1 100.00 0 ARHGEF9 100.00 0 ARSA 100.00 0 ARV1 100.00 0 ARX 76.27 0 ASAH1 100.00 0 ASNS 100.00 0 ASS1 100.00 0 ATAD1 100.00 0 ATCAY 100.00 0 ATM 100.00 0 ATN1 100.00 0 ATP13A2 99.13 0 ATP1A2 99.91 0 ATP1A3 100.00 0 ATP6AP2 98.93 0 ATP7B 100.00 0 ATP8A2 100.00 0 ATXN2 97.08 0 AUH 98.84 0 BCAP31 100.00 0 BCKDHA 100.00 0 BCKDHB 100.00 0 BCS1L 100.00 0 BSCL2 100.00 0 BTK 100.00 0 C19ORF12 100.00 0 C9ORF72 100.00 0 CA8 100.00 0 CACNA1A 100.00 0 CACNA1B 95.99 0 CACNA1E 99.97 0 CACNA1G 100.00 0 CACNB4 100.00 0 CARS2 95.22 0 CBS 100.00 0 CDKL5 99.33 0 CEP290 99.99 0 CHCHD2 100.00 0 CHMP2B 100.00 0 CHRNA2 99.97 0 CHRNA4 99.98 0 CHRNB2 100.00 0 CIZ1 99.96 0 CLCN2 100.00 0 CLCN3 100.00 0 CLCN6 100.00 0 CLPB 100.00 0 CLTC 100.00 0 CNTNAP1 100.00 0 COASY 100.00 0 COL6A3 100.00 0 COQ8A 100.00 0 COQ9 100.00 0 COX10 100.00 0 COX15 100.00 0 COX20 100.00 0 CP 99.98 0 CRAT 100.00 0 CRH 100.00 0 CRLF1 89.13 0 CSF1R 100.00 0 CSTB 100.00 0 CTC1 100.00 0 CTDP1 90.20 0 CTNNB1 100.00 0 CTSA 100.00 0 CTSD 100.00 0 CTSF 89.18 0 CUL4B 98.64 0 CWF19L1 100.00 0 CYB5R3 95.77 0 CYFIP2 100.00 0 CYP27A1 99.38 0 DARS1 100.00 0 DBT 100.00 0 DCAF17 99.11 0 DCC 100.00 0 DCTN1 100.00 0 DDC 100.00 0 DEGS1 100.00 0 DEPDC5 100.00 0 DHDDS 100.00 0 DHX30 100.00 0 DLAT 100.00 0 DLD 100.00 0 DMXL2 99.99 0 DNAJB2 100.00 0 DNAJC12 100.00 0 DNAJC13 100.00 0 DNAJC19 100.00 0 DNAJC5 100.00 0 DNAJC6 100.00 0 DNAL4 100.00 0 DNM1L 100.00 0 DNMT1 99.83 0 EARS2 100.00 0 ECHS1 100.00 0 EEF1A2 98.47 0 ELOVL4 100.00 0 EPRS1 100.00 0 ETHE1 100.00 0 FA2H 92.84 0 FARS2 100.00 0 FASTKD2 100.00 0 FBXL4 100.00 0 FBXO7 100.00 0 FGF14 100.00 0 FITM2 100.00 0 FOLR1 100.00 0 FOXG1 87.63 0 FOXRED1 100.00 0 FRRS1L 87.33 0 FTL 100.00 0 FUCA1 99.67 0 FUS 100.00 0 FXN 96.07 0 GABRA2 100.00 0 GABRB2 100.00 0 GALT 100.00 0 GAMT 98.07 0 GBA 100.00 0 GBE1 100.00 0 GCDH 100.00 0 GCH1 98.16 0 GFAP 100.00 0 GFM1 100.00 0 GFM2 99.99 0 GJC2 88.27 0 GLB1 100.00 0 GLDC 97.21 0 GLRA1 100.00 0 GLRB 100.00 0 GM2A 100.00 0 GNAL 100.00 0 GNAO1 100.00 0 GNB1 100.00 0 GOSR2 100.00 0 GPHN 100.00 0 GPR88 77.04 0 GRID2 100.00 0 GRIN1 100.00 0 GRIN2B 100.00 0 GRN 100.00 0 GSX2 100.00 0 GTPBP2 99.48 0 HECW2 100.00 0 HEXA 100.00 0 HEXB 99.87 0 HIBCH 100.00 0 HPRT1 97.15 0 HSD17B10 100.00 0 HTT 99.18 0 IFIH1 100.00 0 IREB2 100.00 0 IRF2BPL 99.88 0 IVD 100.00 0 JAM2 100.00 0 JPH3 100.00 0 KCNA1 100.00 0 KCNA2 100.00 0 KCNA4 100.00 0 KCNC3 78.67 0 KCND3 100.00 0 KCNMA1 100.00 0 KCNQ2 100.00 0 KCNT1 99.92 0 KCTD17 95.63 0 KCTD7 99.64 0 KIF1C 100.00 0 KIF5A 100.00 0 KMT2B 96.75 0 L2HGDH 100.00 0 LIAS 100.00 0 LIPT1 100.00 0 LIPT2 92.08 0 LMNB1 98.51 0 LRPPRC 100.00 0 LRRK2 100.00 0 LYST 100.00 0 MAPT 100.00 0 MARS2 100.00 0 MCEE 100.00 0 MCOLN1 98.10 0 MDH2 100.00 0 MECP2 100.00 0 MECR 100.00 0 MED20 100.00 0 MEF2C 100.00 0 MFSD8 100.00 0 MICU1 100.00 0 MMAA 100.00 0 MMAB 100.00 0 MMADHC 100.00 0 MMUT 100.00 0 MPV17 100.00 0 MRE11 100.00 0 MRPS34 99.28 0 MTHFR 100.00 0 MTR 100.00 0 MTRFR 100.00 0 MTRR 100.00 0 MYBPC1 100.00 0 MYORG 100.00 0 NALCN 100.00 0 NAXD 100.00 0 NDUFA1 100.00 0 NDUFA10 99.52 0 NDUFA12 100.00 0 NDUFA2 100.00 0 NDUFA9 100.00 0 NDUFAF2 100.00 0 NDUFAF4 100.00 0 NDUFAF5 100.00 0 NDUFAF6 95.34 0 NDUFS1 100.00 0 NDUFS3 100.00 0 NDUFS4 100.00 0 NDUFS7 100.00 0 NDUFS8 100.00 0 NDUFV1 100.00 0 NEU1 100.00 0 NGLY1 100.00 0 NHLRC2 100.00 0 NKX2-1 89.99 0 NKX6-2 70.62 0 NPC1 100.00 0 NPC2 100.00 0 NTN1 94.10 0 NTNG2 91.87 0 NUP62 100.00 0 MED12 100.00 0 OPA3 100.00 0 PAH 100.00 0 PANK2 95.70 0 PARK7 100.00 0 PODXL 96.85 0 PCBD1 92.74 0 PCCA 100.00 0 PCCB 100.00 0 PCDH12 100.00 0 PCDH19 100.00 0 PDE10A 100.00 0 PDE2A 100.00 0 PDE8B 97.56 0 PDGFB 100.00 0 PDGFRB 100.00 0 PDHA1 100.00 0 PDHB 100.00 0 PDHX 100.00 0 PDYN 100.00 0 PEX16 100.00 0 PGK1 100.00 0 PIGP 100.00 0 PINK1 91.10 0 PLA2G6 100.00 0 PLEKHG2 100.00 0 PLP1 100.00 0 PMM2 100.00 0 PMPCB 100.00 0 PNKD 100.00 0 PNKP 100.00 0 PNPLA8 100.00 0 PNPT1 100.00 0 POLG 100.00 0 POLR1C 100.00 0 POLR3A 100.00 0 PPT1 100.00 0 PRICKLE1 100.00 0 PRKCG 100.00 0 PRKN 100.00 0 PRKRA 100.00 0 PRNP 100.00 0 PRRT2 100.00 0 PTRHD1 100.00 0 PTS 100.00 0 PUM1 100.00 0 PURA 88.25 0 QDPR 99.38 0 RAB11B 100.00 0 RAB39B 100.00 0 RAD51 100.00 0 RELN 100.00 0 REPS1 100.00 0 RHOBTB2 100.00 0 RNF216 100.00 0 SACS 100.00 0 SCARB2 100.00 0 SCN11A 99.99 0 SCN1A 100.00 0 SCN2A 100.00 0 SCN4A 100.00 0 SCN8A 100.00 0 SCP2 100.00 0 SCYL1 100.00 0 SDHA 98.70 0 SDHAF1 96.31 0 SDHD 100.00 0 SEPSECS 100.00 0 SERAC1 100.00 0 SETD5 100.00 0 SETX 100.00 0 SGCE 100.00 0 SLC16A2 100.00 0 SLC18A2 100.00 0 SLC19A3 99.96 0 SLC1A3 100.00 0 SLC20A2 100.00 0 SLC25A19 100.00 0 SLC25A42 99.96 0 SLC2A1 100.00 0 SLC30A10 100.00 0 SLC30A9 100.00 0 SLC39A14 99.95 0 SLC39A8 99.72 0 SLC44A1 97.36 0 SLC6A1 100.00 0 SLC6A3 100.00 0 SLC6A5 100.00 0 SLC6A8 96.54 0 SLC9A6 97.84 0 SMPD1 100.00 0 SNCA 100.00 0 SPG11 100.00 0 SPOP 100.00 0 SPR 97.94 0 SPTBN2 100.00 0 SQSTM1 95.44 0 SRD5A3 98.74 0 ST3GAL5 92.43 0 STUB1 99.46 0 STXBP1 100.00 0 SUCLA2 100.00 0 SUCLG1 99.97 0 SUMF1 100.00 0 SUOX 100.00 0 SURF1 92.90 0 SYNE1 100.00 0 SYNJ1 100.00 0 SYT1 100.00 0 TACO1 99.96 0 TAF1 100.00 0 TANGO2 100.00 0 TARDBP 100.00 0 TBC1D24 100.00 0 TBK1 100.00 0 TBL1XR1 100.00 0 TENM4 100.00 0 TGM6 100.00 0 TH 100.00 0 THAP1 100.00 0 TIMM8A 100.00 0 TMEM240 100.00 0 TOR1A 100.00 0 TPI1 100.00 0 TPK1 100.00 0 TRAK1 100.00 0 TRAPPC11 100.00 0 TRAPPC12 100.00 0 TREM2 100.00 0 TRIT1 100.00 0 TSC1 100.00 0 TSC2 100.00 0 TSEN2 100.00 0 TSEN54 94.95 0 TSFM 92.64 0 TTPA 87.42 0 TUBB4A 100.00 0 TXN2 100.00 0 TYROBP 100.00 0 UBA5 100.00 0 UBQLN2 99.91 0 UBR4 99.78 0 UBTF 100.00 0 UFM1 100.00 0 UGDH 100.00 0 UNC13A 99.92 0 UQCRQ 100.00 0 VAC14 100.00 0 VAMP1 100.00 0 VAMP2 100.00 0 VCP 98.45 0 VPS13A 100.00 0 VPS13C 100.00 0 VPS13D 100.00 0 VPS16 100.00 0 VPS35 100.00 0 VPS41 100.00 0 VPS4A 100.00 0 VWA3B 100.00 0 WARS2 100.00 0 WDR45 100.00 0 WDR73 100.00 0 WDR81 100.00 0 WWOX 100.00 0 XK 99.86 0 XPA 99.77 0 XPC 100.00 0 XPR1 100.00 0 YY1 100.00 0 ZC4H2 100.00 0 ZFYVE26 100.00 0 ZNF142 100.00 0 -
Non syndromic hearing loss and deafness (2 genes) - IPG - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments GJB2 GJB6 -
Ovarian cancer / BRCA1/2 somatic
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments BRCA1 100.00 0 BRCA2 100.00 0 -
Pancreatitis (7 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments CFTR 100.00 1 Duplications/deletions by MLPA SPINK1 100.00 0 PRSS1 100.00 0 Only exons 2, 3, 4, 5 are amplified and analyzed by sequencing. CTRC 100.00 0 CASR 100.00 0 CLDN2 100.00 0 CPA1 100.00 0 -
Panel Nephro - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments ACE 97.24 0 ACTG2 100.00 0 ACTN4 100.00 0 ADAMTS13 96.63 0 ADAMTS9 100.00 0 AGXT 100.00 0 AGTR1 100.00 0 ALDOB 100.00 0 ALG5 100.00 0 ALG8 100.00 0 ALG9 99.28 0 ALMS1 100.00 0 ALPL 100.00 0 ABCD1 86.23 0 ANKS6 91.46 0 ANLN 100.00 0 ANOS1 94.70 0 AP2S1 100.00 0 APOA1 100.00 0 APOL1 100.00 0 APRT 100.00 0 AQP2 100.00 0 ARHGDIA 100.00 0 ARL6 100.00 0 ATP6V0A4 100.00 0 ATP6V1B1 100.00 0 ATP7B 100.00 0 ATXN10 99.92 0 AVIL 100.00 0 AVPR2 100.00 0 B2M 100.00 0 B9D1 100.00 0 B9D2 100.00 0 BBIP1 100.00 0 BBS1 100.00 0 BBS10 100.00 0 BBS12 100.00 0 BBS2 100.00 0 BBS4 100.00 0 BBS5 100.00 0 BBS7 100.00 0 BBS9 100.00 0 BMP4 100.00 0 BMP7 100.00 0 BNC2 100.00 0 BSND 100.00 0 C3 100.00 0 CA2 100.00 0 CASR 100.00 0 CC2D2A 100.00 0 CD151 100.00 0 CD2AP 100.00 0 CD46 100.00 0 CDC73 100.00 0 CENPF 100.00 0 CEP164 100.00 0 CEP290 99.95 0 CEP41 100.00 0 CEP55 100.00 0 CEP83 100.00 0 CFB 100.00 0 CFH 100.00 0 CFHR1 95.06 0 CFHR3 99.44 0 CFHR5 100.00 0 CFI 100.00 0 CHD7 100.00 0 CHRM3 100.00 0 CHRNA3 99.35 0 CLCN5 100.00 0 CLCNKA 100.00 0 CLCNKB 100.00 0 CLDN10 100.00 0 CLDN16 100.00 0 CLDN19 100.00 0 CNNM2 99.42 0 COL4A1 99.52 0 COL4A3 99.47 0 COL4A4 100.00 0 COL4A5 99.90 0 COQ2 95.50 0 COQ6 100.00 0 COQ8B 100.00 0 CRB2 94.60 0 CSPP1 100.00 0 CTNS 100.00 0 CTU2 98.44 0 CUBN 100.00 0 CYP24A1 100.00 0 DAAM2 100.00 0 DCDC2 100.00 0 DGKE 100.00 0 DHCR7 99.99 0 DIS3L2 100.00 0 DNAJB11 100.00 0 DSTYK 100.00 0 DZIP1L 100.00 0 EGFR 99.63 0 EHHADH 100.00 0 EMP2 100.00 0 EYA1 100.00 0 FANCA 100.00 0 FAM20A 99.78 0 CCNQ 82.12 0 FAN1 100.00 0 FGA 100.00 0 FGF20 99.13 0 FGF23 100.00 0 FH 100.00 0 FLCN 100.00 0 FN1 99.98 0 FRAS1 100.00 0 FREM1 100.00 0 FREM2 100.00 0 FXYD2 100.00 0 G6PC1 100.00 0 GALT 100.00 0 GANAB 100.00 0 GATA3 100.00 0 GATM 100.00 0 GLA 100.00 0 GLI3 100.00 0 GLIS2 100.00 0 GNA11 99.87 0 GPC3 99.84 0 GREB1L 100.00 0 GRHPR 100.00 0 GRIP1 100.00 0 GSN 100.00 0 HAAO 100.00 0 HNF1B 100.00 0 HNF4A 100.00 0 HOGA1 100.00 0 HOXA13 71.26 0 HPRT1 97.10 0 HPSE2 100.00 0 HSD11B2 78.42 0 IFT122 100.00 0 IFT140 99.96 0 IFT172 100.00 0 IFT27 100.00 0 IFT80 100.00 0 INF2 99.98 0 INVS 100.00 0 IQCB1 100.00 0 JAG1 99.83 0 KANK2 100.00 0 KCNJ1 100.00 0 KCNJ10 100.00 0 KCNJ16 100.00 0 KDM6A 99.91 0 KLHL3 100.00 0 KMT2D 100.00 0 KYNU 99.98 0 LAMB2 100.00 0 LIFR 100.00 0 LMX1B 100.00 0 LRIG2 99.95 0 LRP2 100.00 0 CORIN 99.14 0 LRP5 97.83 0 LRP6 100.00 0 LYZ 100.00 0 LZTFL1 100.00 0 MAGED2 99.94 0 MAGI2 93.63 0 MAPKBP1 100.00 0 MET 100.00 0 MKKS 100.00 0 MKS1 100.00 0 MUC1 100.00 0 MYO1E 100.00 0 MYOCD 100.00 0 NADSYN1 100.00 0 NEK9 100.00 0 NIPBL 100.00 0 NOTCH2 100.00 0 NPHP1 100.00 0 NPHP3 99.73 0 NPHP4 100.00 0 NPHS1 100.00 0 NPHS2 100.00 0 NR3C2 100.00 0 NRIP1 100.00 0 NUP107 100.00 0 NUP133 100.00 0 NUP160 100.00 0 NUP205 100.00 0 NUP85 100.00 0 NUP93 100.00 0 OCRL 99.96 0 OFD1 100.00 0 PAX2 100.00 0 PBX1 100.00 0 PCBD1 92.74 0 PDE6D 100.00 0 PDSS2 100.00 0 PHEX 98.98 0 PKD1 96.86 0 PKD2 92.32 0 PKHD1 100.00 0 PLCE1 100.00 0 PLG 100.00 0 PLVAP 100.00 0 PRKCSH 100.00 0 PTPRO 100.00 0 REN 100.00 0 RET 99.35 0 ROBO2 100.00 0 ROR2 98.01 0 RPGRIP1L 99.18 0 RRAGD 99.90 0 RRM2B 100.00 0 SALL1 100.00 0 SARS2 100.00 0 SCARB2 100.00 0 SCNN1A 100.00 0 SCNN1B 100.00 0 SCNN1G 100.00 0 SDCCAG8 100.00 0 SDHB 100.00 0 SDHD 100.00 0 SEC61A1 100.00 0 SEC63 99.95 0 SGPL1 99.92 0 SIX1 100.00 0 SIX5 93.51 0 SLC12A1 100.00 0 SLC12A3 100.00 0 SLC1A1 100.00 0 SLC22A12 100.00 0 SLC2A2 100.00 0 SLC2A9 100.00 0 SLC34A1 100.00 0 SLC3A1 100.00 0 SLC4A1 100.00 0 SLC4A4 100.00 0 SLC5A2 100.00 0 SLC6A19 100.00 0 SLC7A7 100.00 0 SLC7A9 100.00 0 SLC9A3R1 100.00 0 SLIT2 99.95 0 SMARCAL1 100.00 0 SOX17 99.26 0 STRA6 100.00 0 TBC1D1 100.00 0 TBC1D8B 100.00 0 , TBX18 99.84 0 TCTN2 100.00 0 TCTN3 100.00 0 TFAP2A 100.00 0 THBD 100.00 0 TMEM138 100.00 0 TMEM216 100.00 0 TMEM231 100.00 0 TMEM237 100.00 0 TMEM260 97.92 0 TMEM67 100.00 0 TRAP1 95.57 0 TRIM32 100.00 0 TRIM8 100.00 0 TRPC6 100.00 0 TRPM6 100.00 0 TSC1 100.00 0 TSC2 100.00 0 TTC21B 50.00 0 TTC8 100.00 0 TTR 100.00 0 TULP3 100.00 0 UMOD 100.00 0 UPK3A 100.00 0 VDR 100.00 0 VHL 100.00 0 WBP11 100.00 0 WDR19 100.00 0 WDR35 100.00 0 WDR73 100.00 0 WNK1 100.00 0 WNK4 100.00 0 WNT5A 88.79 0 WT1 95.16 0 XDH 100.00 0 XPO5 99.80 0 ZIC3 100.00 0 ZMYM2 99.97 0 ZNF423 100.00 0 -
Paraganglioma-pheochromocytoma (6 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments SDHA 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) SDHB 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) SDHC 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) SDHD 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) RET 30.28 0 Coding exons and intronic borders +-14bp (Sanger sequencing) VHL 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) -
Pituitary adenoma (4 genes) - ULG
Gene % of coding sequence sufficiently covered to detect heterozygous mutations Copy number variation Comments MEN1 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) AIP 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) CDKN1B 100.00 1 Coding exons and intronic borders +-14bp (Sanger sequencing) PRKAR1A 100.00 0 Coding exons and intronic borders +-14bp (Sanger sequencing)